Wiki source code of ilastik

Version 38.1 by abonard on 2025/06/03 11:03
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adavison 1.1 1
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abonard 3.1 3 * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
jessicamitchell 2.1 4
abonard 31.1 5 * ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
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abonard 3.1 7 === **Beginner** ===
jessicamitchell 2.1 8
abonard 3.1 9 === [[QUINT Workflow – Atlas-based quantification and spatial analysis>>https://www.youtube.com/watch?v=n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
jessicamitchell 2.1 10
abonard 3.1 11 **Level**: beginner(%%) **Type**: video tutorial
jessicamitchell 2.1 12
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14 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 31.1 16 === **Advanced** ===
jessicamitchell 2.1 17
abonard 31.1 18 === [[Object Classification>>https://youtu.be/SQeRGvHeT3o||rel=" noopener noreferrer" target="_blank"]] ===
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20 **Level**: advanced(%%) **Type**: video tutorial
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22 Learn how to use the object classification workflow to classify full objects, based on object-level features and user annotations.
23 {{html}}
24 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/SQeRGvHeT3o" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 32.1 26 === [[Pixel Classification workflow>>https://youtu.be/5N0XYW9gRZY||rel=" noopener noreferrer" target="_blank"]] ===
abonard 31.1 27
abonard 32.1 28 **Level**: advanced(%%) **Type**: video tutorial
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30 This demonstration guides you through the Pixel Classification workflow by showing you how to assign labels to pixels based on pixel features and user annotations. Showing you how to select features of generic pixel features, smoothed pixel intensity, edge filters and texture descriptors.
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32 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/5N0XYW9gRZY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 33.1 34 === [[EBRAINS Atlases - QUINT workflow Tutorial>>https://youtu.be/n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
abonard 32.1 35
abonard 33.1 36 **Level**: advanced(%%) **Type**: video tutorial
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38 {{html}}
39 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 34.1 41 === [[Tracking workflow>>https://youtu.be/bZoWx2FuT08||rel=" noopener noreferrer" target="_blank"]] ===
abonard 33.1 42
abonard 34.1 43 **Level**: advanced(%%) **Type**: video tutorial
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45 This demo will guide you through the different types of tracking workflows in ilastik.
46 {{html}}
47 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/bZoWx2FuT08" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 35.1 49 === [[Carving Workflow>>https://youtu.be/xGyTriPQXHI||rel=" noopener noreferrer" target="_blank"]] ===
abonard 34.1 50
abonard 35.1 51 **Level**: advanced(%%) **Type**: video tutorial
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53 In this demo we want to briefly show you how you can use the carving module to aid you in the extraction of objects from images that are only separable by their boundary - i.e. objects that do not differ from the rest of the image by their internal appearance.
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55 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/xGyTriPQXHI" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 36.1 57 === [[Cell Density Counting Workflow>>https://youtu.be/N-QhiTWVDmk||rel=" noopener noreferrer" target="_blank"]] ===
abonard 35.1 58
abonard 36.1 59 **Level**: advanced(%%) **Type**: video tutorial
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61 In this workflow we will look into how to add dots for the object instances, brush strokes over the background
62 and add boxes to monitor the count in sub-image regions.
63 {{html}}
64 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/N-QhiTWVDmk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
65 {{/html}}
abonard 37.1 66 === [[Tracking MaMuT Export>>https://youtu.be/kjVqWSSdDmU||rel=" noopener noreferrer" target="_blank"]] ===
abonard 36.1 67
abonard 37.1 68 **Level**: advanced(%%) **Type**: video tutorial
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70 This short video demonstrates how to export ilastik tracking results for visualization/proofreading to MaMuT.
71 {{html}}
72 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/kjVqWSSdDmU" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 38.1 74 === [[Boundary-based segmentation with Multicut>>https://youtu.be/leuTtIAmEwE||rel=" noopener noreferrer" target="_blank"]] ===
abonard 37.1 75
abonard 38.1 76 **Level**: advanced(%%) **Type**: video tutorial
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78 This tutorial will guide you through the boundary-based segmentation with Multicut.
79 {{html}}
80 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/leuTtIAmEwE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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