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Wiki source code of ilastik

Version 55.1 by abonard on 2025/09/16 10:47
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adavison 1.1 1
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abonard 3.1 3 * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
jessicamitchell 2.1 4
abonard 49.1 5 * ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
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abonard 3.1 7 === **Beginner** ===
jessicamitchell 2.1 8
abonard 3.1 9 === [[QUINT Workflow – Atlas-based quantification and spatial analysis>>https://www.youtube.com/watch?v=n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
jessicamitchell 2.1 10
abonard 3.1 11 **Level**: beginner(%%) **Type**: video tutorial
jessicamitchell 2.1 12
13 {{html}}
14 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 49.1 16 === **Advanced** ===
jessicamitchell 2.1 17
abonard 49.1 18 === [[Object Classification>>https://youtu.be/SQeRGvHeT3o||rel=" noopener noreferrer" target="_blank"]] ===
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20 **Level**: advanced(%%) **Type**: video tutorial
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22 Learn how to use the object classification workflow to classify full objects, based on object-level features and user annotations.
23 {{html}}
24 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/SQeRGvHeT3o" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
25 {{/html}}
abonard 50.1 26 === [[Pixel Classification workflow>>https://youtu.be/5N0XYW9gRZY||rel=" noopener noreferrer" target="_blank"]] ===
abonard 49.1 27
abonard 50.1 28 **Level**: advanced(%%) **Type**: video tutorial
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30 This demonstration guides you through the Pixel Classification workflow by showing you how to assign labels to pixels based on pixel features and user annotations. Showing you how to select features of generic pixel features, smoothed pixel intensity, edge filters and texture descriptors.
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32 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/5N0XYW9gRZY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
33 {{/html}}
abonard 51.1 34 === [[EBRAINS Atlases - QUINT workflow Tutorial>>https://youtu.be/n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
abonard 50.1 35
abonard 51.1 36 **Level**: advanced(%%) **Type**: video tutorial
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38 {{html}}
39 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 52.1 41 === [[Tracking workflow>>https://youtu.be/bZoWx2FuT08||rel=" noopener noreferrer" target="_blank"]] ===
abonard 51.1 42
abonard 52.1 43 **Level**: advanced(%%) **Type**: video tutorial
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45 This demo will guide you through the different types of tracking workflows in ilastik.
46 {{html}}
47 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/bZoWx2FuT08" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 53.1 49 === [[Carving Workflow>>https://youtu.be/xGyTriPQXHI||rel=" noopener noreferrer" target="_blank"]] ===
abonard 52.1 50
abonard 53.1 51 **Level**: advanced(%%) **Type**: video tutorial
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53 In this demo we want to briefly show you how you can use the carving module to aid you in the extraction of objects from images that are only separable by their boundary - i.e. objects that do not differ from the rest of the image by their internal appearance.
54 {{html}}
55 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/xGyTriPQXHI" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 54.1 57 === [[Cell Density Counting Workflow>>https://youtu.be/N-QhiTWVDmk||rel=" noopener noreferrer" target="_blank"]] ===
abonard 53.1 58
abonard 54.1 59 **Level**: advanced(%%) **Type**: video tutorial
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61 In this workflow we will look into how to add dots for the object instances, brush strokes over the background
62 and add boxes to monitor the count in sub-image regions.
63 {{html}}
64 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/N-QhiTWVDmk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
65 {{/html}}
abonard 55.1 66 === [[Tracking MaMuT Export>>https://youtu.be/kjVqWSSdDmU||rel=" noopener noreferrer" target="_blank"]] ===
abonard 54.1 67
abonard 55.1 68 **Level**: advanced(%%) **Type**: video tutorial
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70 This short video demonstrates how to export ilastik tracking results for visualization/proofreading to MaMuT.
71 {{html}}
72 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/kjVqWSSdDmU" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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