Changes for page TVB EBRAINS hands-on
Last modified by petkoski on 2025/10/09 12:30
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... ... @@ -18,16 +18,16 @@ 18 18 19 19 The objective is to give to the participants an overview to building whole-brain network models with TVB. 20 20 21 -We will begin with the [[First steps of TVB>>https://lab.c h.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20Baltic-Nordic%20school%202024/1_TVB_First_steps.ipynb||style="background-color: rgb(255, 255, 255);"]], where we will describe the building blocks of TVB through the paradigm of resting state activity.21 +We will begin with the [[First steps of TVB>>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20hands-on/1_TVB_First_steps.ipynb||style="background-color: rgb(255, 255, 255);"]], where we will describe the building blocks of TVB through the paradigm of resting state activity. 22 22 23 -This will be followed by [[Modelling Epilepsy>>https://lab.c h.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20Baltic-Nordic%20school%202024/2_TVB_Modelling_Epilepsy.ipynb||style="background-color: rgb(255, 255, 255);"]], where seizure propagation will be modeled.23 +This will be followed by [[Modelling Epilepsy>>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20hands-on/2_TVB_Modelling_Epilepsy.ipynb||style="background-color: rgb(255, 255, 255);"]], where seizure propagation will be modeled. 24 24 25 -Then, there is one tutorial describing a deeper analysis of [[BOLD monitors>>https://lab.c h.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20Baltic-Nordic%20school%202024/3_TVB_BOLD_digging_deeper.ipynb||style="background-color: rgb(255, 255, 255);"]].25 +Then, there is one tutorial describing a deeper analysis of [[BOLD monitors>>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20hands-on/3_TVB_BOLD_digging_deeper.ipynb||style="background-color: rgb(255, 255, 255);"]]. 26 26 27 -There is also a fourth tutorial which describes application of a fast back-end implementation of the Montbrio-Pazo-Roxin model used for modeling [[resting state fMRI >>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20 Baltic-Nordic%20school%202024/MPR_rs.ipynb]]. This is a based on a more detailed showcase [[Degeneracy in neuroscience>>https://wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/]], which described the interpersonal variability analyzed by the [[Virtual Ageing Brain>>https://www.sciencedirect.com/science/article/pii/S1053811923005542?via%3Dihub]] study.27 +There is also a fourth tutorial which describes application of a fast back-end implementation of the Montbrio-Pazo-Roxin model used for modeling [[resting state fMRI >>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20hands-on/MPR_rs.ipynb]]. This is a based on a more detailed showcase [[Degeneracy in neuroscience>>https://wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/]], which described the interpersonal variability analyzed by the [[Virtual Ageing Brain>>https://www.sciencedirect.com/science/article/pii/S1053811923005542?via%3Dihub]] study. 28 28 29 29 30 -Finally, the collab contains one tutorial where a [[Bayesian approach>>https:// wiki.ebrains.eu/bin/view/Collabs/ebrains-task-3-3/Drive#notebooks/EITN_tutorial||style="background-color: rgb(255, 255, 255);"]] is used on synthetic data to infer the posterior of the parameters for a single brain region.30 +Finally, the collab contains one tutorial where a [[Bayesian approach>>https://lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20EBRAINS%20hands-on/DCM_ERPs_MCMC_ebrains.ipynb||style="background-color: rgb(255, 255, 255);"]] is used on synthetic data to infer the posterior of the parameters for a single brain region. 31 31 32 32 33 33 These can all be found in the drive and accessed through the lab.