Last modified by mhashemi on 2025/03/12 11:20
From version 4.1
edited by petkoski
on 2024/05/21 10:53
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To version 11.1
edited by petkoski
on 2024/05/21 11:11
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= My Collab's Extended Title =
5 += Building personalized brain network models with TVB =
6 6  
7 -My collab's subtitle
7 +Spase Petkoski, Damien Depannemaecker and Pierpaolo Sorrentino
8 8  )))
9 9  )))
10 10  
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14 14  (((
15 15  = What can I find here? =
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
17 +This collab contains access to the notebooks and reading materials that will be used during the EBRAINS Baltic-Nordic summer school 2024 [[https:~~/~~/lsmu.lt/en/events/ebrains/>>https://lsmu.lt/en/events/ebrains/]].
20 20  
21 -= Who has access? =
19 +It will allow users to build whole-brain network models with TVB.
22 22  
23 -Describe the audience of this collab.
21 +We will begin wit the [[First steps of TVB>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/1_TVB_First_steps.ipynb||style="background-color: rgb(255, 255, 255);"]], where we will describe the building blocks of TVB through the paradigm of resting state activity. This will be followed by [[Modelling Epilepsy>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/2_TVB_Modelling_Epilepsy.ipynb||style="background-color: rgb(255, 255, 255);"]], where seizure propagation will be modeled. Finally there is one tutorial describing deeper analysis of [[BOLD monitors>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/3_TVB_BOLD_digging_deeper.ipynb||style="background-color: rgb(255, 255, 255);"]]. These can be all found in the following EBRAINS lab:
22 +
23 +[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials]]
24 +
25 += Other tutorials =
26 +
27 +In addition to these noptebooks, we also refer to the readers to the collab for the Showcase 1 of HBP: "Degeneracy in neuroscience - when is Big Data big enough"
28 +
29 +[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/>>url:https://wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/]]
30 +
31 += References =
32 +
33 +* (((
34 +Sanz-Leon P, Knock SA, Spiegler A, Jirsa VK. [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. Neuroimage. 2015 May 1;111:385-430.
24 24  )))
36 +* (((
37 +Schirner M, Domide L, Perdikis D, Triebkorn P, Stefanovski L, Pai R, Prodan P, Valean B, Palmer J, Langford C, Blickensdörfer A. [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage. 2022 May 1;251:118973.
38 +)))
39 +* (((
40 +Lavanga M, Stumme J, Yalcinkaya BH, Fousek J, Jockwitz C, Sheheitli H, Bittner N, Hashemi M, Petkoski S, Caspers S, Jirsa V. [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage. 2023 Dec 1;283:120403.
41 +)))
42 +* (((
43 +Wang HE, Triebkorn P, Breyton M, Dollomaja B, Lemarechal JD, Petkoski S, Sorrentino P, Depannemaecker D, Hashemi M, Jirsa VK. [[Virtual brain twins: from basic neuroscience to clinical use>>https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review. 2024 May;11(5):nwae079.
44 +)))
45 +)))
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