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2	2	(((
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4	4	(((
5		-= My Collab's Extended Title =
	5	+= Building personalized brain network models with TVB =
6	6
7		-My collab's subtitle
	7	+Spase Petkoski, Damien Depannemaecker and Pierpaolo Sorrentino
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14	14	(((
15	15	= What can I find here? =
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17		-* Notice how the table of contents on the right
18		-* is automatically updated
19		-* to hold this page's headers
	17	+This collab contains access to the notebooks and reading materials that will be used during the EBRAINS Baltic-Nordic summer school 2024 [[https:~~/~~/lsmu.lt/en/events/ebrains/>>https://lsmu.lt/en/events/ebrains/]].
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21		-= Who has access? =
	19	+The objective is to give to the participants an overview to building whole-brain network models with TVB. We will begin with the [[First steps of TVB>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/1_TVB_First_steps.ipynb||style="background-color: rgb(255, 255, 255);"]], where we will describe the building blocks of TVB through the paradigm of resting state activity. This will be followed by [[Modelling Epilepsy>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/2_TVB_Modelling_Epilepsy.ipynb||style="background-color: rgb(255, 255, 255);"]], where seizure propagation will be modeled. Finally, there is one tutorial describing deeper analysis of [[BOLD monitors>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/3_TVB_BOLD_digging_deeper.ipynb||style="background-color: rgb(255, 255, 255);"]]. These can all be found in the following EBRAINS lab:
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23		-Describe the audience of this collab.
	21	+[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials]]
	22	+
	23	+= Requirements =
	24	+
	25	+School participants should have EBRAINS accounts to be able to access and work on the tutorials.
	26	+
	27	+They are also advised to install TVB locally in case of connection issues. After installation from the following link: https:~/~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software users can access many more tutorials.
	28	+
	29	+= Other tutorials =
	30	+
	31	+In addition to these notebooks, we also refer to the readers to the collab for the Showcase 1 of HBP: "Degeneracy in neuroscience - when is Big Data big enough"
	32	+
	33	+[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/>>url:https://wiki.ebrains.eu/bin/view/Collabs/sga3-d1-5-showcase-1/]]
	34	+
	35	+= References =
	36	+
	37	+* (((
	38	+Sanz-Leon P, Knock SA, Spiegler A, Jirsa VK. [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. Neuroimage. 2015 May 1;111:385-430.
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	40	+* (((
	41	+Schirner M, Domide L, Perdikis D, Triebkorn P, Stefanovski L, Pai R, Prodan P, Valean B, Palmer J, Langford C, Blickensdörfer A. [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage. 2022 May 1;251:118973.
	42	+)))
	43	+* (((
	44	+Lavanga M, Stumme J, Yalcinkaya BH, Fousek J, Jockwitz C, Sheheitli H, Bittner N, Hashemi M, Petkoski S, Caspers S, Jirsa V. [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage. 2023 Dec 1;283:120403.
	45	+)))
	46	+* (((
	47	+Wang HE, Triebkorn P, Breyton M, Dollomaja B, Lemarechal JD, Petkoski S, Sorrentino P, Depannemaecker D, Hashemi M, Jirsa VK. [[Virtual brain twins: from basic neuroscience to clinical use>>https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review. 2024 May;11(5):nwae079.
	48	+)))
	49	+)))
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