Last modified by emrebasp on 2024/05/31 14:36
From version 11.1
edited by emrebasp
on 2024/05/27 14:54
Change comment: There is no comment for this version
To version 14.1
edited by emrebasp
on 2024/05/29 10:27
Change comment: There is no comment for this version

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22 22  
23 23  Access to the notebooks and materials requires to have an EBRAINS account.
24 24  
25 -Participants are also suggested to download the materials and install TVB locally in case of connection issues. The installation can be done via the following link: [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software>>https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software]] .
25 +Participants are also suggested to download the materials and install TVB locally in case of connection issues. The material and notebooks can be downloaded by clicking on "Drive" on the left hand side. If the notebooks are locally run, then %matplotlib widget should be disabled by commenting it. The TVB installation can be done via the following link: [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software>>https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software]] .
26 26  
27 27  = References =
28 28  
29 -* (((
30 -Sanz-Leon P., Knock S. A., Spiegler A., Jirsa V. K. (2015). [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>url:https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. NeuroImage, 111, 385-430.
29 +(((
30 +* Baspinar, E., Cecchini, G., DePass, M., Andujar, M., Pani, P., Ferraina, S., Moreno-Bote, R., Cos, I., Destexhe, A. (2023). [[A biologically plausible decision-making model based on interacting cortical columns>>https://www.biorxiv.org/content/10.1101/2023.02.28.530384v2]]. bioRxiv, 2023-02.
31 +* Di Volo, M., Romagnoni, A., Capone, C., Destexhe, A. (2019). [[Biologically realistic mean-field models of conductance-based networks of spiking neurons with adaptation>>https://direct.mit.edu/neco/article-abstract/31/4/653/8461/Biologically-Realistic-Mean-Field-Models-of?redirectedFrom=fulltext]]. Neural Computation, 31(4), 653-680.
32 +* Goldman, J. S., Kusch, L., Aquilue, D., Yalçınkaya, B. H., Depannemaecker, D., Ancourt, K., Nghiem, T. E., Jirsa, V., Destexhe, A. (2023). [[A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics>>https://www.frontiersin.org/articles/10.3389/fncom.2022.1058957/full]]. Frontiers in Computational Neuroscience, 16, 1058957.
33 +* Lavanga M., Stumme J., Yalcinkaya B. H., Fousek J., Jockwitz C., Sheheitli H., Bittner N., Hashemi M., Petkoski S., Caspers S., Jirsa V. (2023). [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>url:https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage, 283, 120403.
34 +* Sacha, M., Goldman, J. S., Kusch, L., Destexhe, A. (2024). [[Asynchronous and slow-wave oscillatory states in connectome-based models of mouse, monkey and human cerebral cortex>>https://www.mdpi.com/2076-3417/14/3/1063]]. Applied Sciences, 14(3), 1063.
35 +* Sanz-Leon P., Knock S. A., Spiegler A., Jirsa V. K. (2015). [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>url:https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. NeuroImage, 111, 385-430.
36 +* Schirner M., Domide L., Perdikis D., Triebkorn P., Stefanovski L., Pai R., Prodan P., Valean B., Palmer J., Langford C., Blickensdörfer A. (2022). [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>url:https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage, 251, 118973.
37 +* Wang H. E., Triebkorn P., Breyton M., Dollomaja B., Lemarechal J. D., Petkoski S., Sorrentino P., Depannemaecker D., Hashemi M., Jirsa V. K. (2024). [[Virtual brain twins: from basic neuroscience to clinical use>>url:https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review, 11(5), nwae079.
31 31  )))
32 -* (((
33 -Schirner M., Domide L., Perdikis D., Triebkorn P., Stefanovski L., Pai R., Prodan P., Valean B., Palmer J., Langford C., Blickensdörfer A. (2022). [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>url:https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage, 251, 118973.
34 -)))
35 -* (((
36 -Lavanga M., Stumme J., Yalcinkaya B. H., Fousek J., Jockwitz C., Sheheitli H., Bittner N., Hashemi M., Petkoski S., Caspers S., Jirsa V. (2023). [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>url:https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage, 283, 120403.
37 -)))
38 -* (((
39 -Wang H. E., Triebkorn P., Breyton M., Dollomaja B., Lemarechal J. D., Petkoski S., Sorrentino P., Depannemaecker D., Hashemi M., Jirsa V. K. (2024). [[Virtual brain twins: from basic neuroscience to clinical use>>url:https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review, 11(5), nwae079.
40 -)))
41 -* (((
42 -Baspinar, E., Cecchini, G., DePass, M., Andujar, M., Pani, P., Ferraina, S., Moreno-Bote, R., Cos, I., Destexhe, A. (2023). [[A biologically plausible decision-making model based on interacting cortical columns>>https://www.biorxiv.org/content/10.1101/2023.02.28.530384v2]]. bioRxiv, 2023-02.
43 43  
44 -[3]: Di Volo, M., Romagnoni, A., Capone, C., Destexhe, A. (2019). [[Biologically realistic mean-field models of conductance-based networks of spiking neurons with adaptation>>https://direct.mit.edu/neco/article-abstract/31/4/653/8461/Biologically-Realistic-Mean-Field-Models-of?redirectedFrom=fulltext]]. Neural Computation, 31(4), 653-680.
45 -
46 -[1]: Goldman, J. S., Kusch, L., Aquilue, D., Yalçınkaya, B. H., Depannemaecker, D., Ancourt, K., Nghiem, T. E., Jirsa, V., Destexhe, A. (2023). [[A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics>>https://www.frontiersin.org/articles/10.3389/fncom.2022.1058957/full]]. Frontiers in Computational Neuroscience, 16, 1058957.
40 +(((
41 +
47 47  )))
48 -* (((
49 -[2]: Sacha, M., Goldman, J. S., Kusch, L., Destexhe, A. (2024). [[Asynchronous and slow-wave oscillatory states in connectome-based models of mouse, monkey and human cerebral cortex>>https://www.mdpi.com/2076-3417/14/3/1063]]. Applied Sciences, 14(3), 1063.
50 50  )))
51 -)))
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