Changes for page EBRAINS Bilbao TVB Hands-on
Last modified by emrebasp on 2024/05/31 14:36
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... ... @@ -22,25 +22,33 @@ 22 22 23 23 Access to the notebooks and materials requires to have an EBRAINS account. 24 24 25 -Participants are also suggested to download the materials and install TVB locally in case of connection issues. The material and notebookscan be downloaded by clicking on "Drive" onthe left hand side. If the notebooks arelocally run, then "%matplotlib widget" should be disabled by commentingit in thecorresponding cells. The TVB installationcanbe done via the following link: [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software>>https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software]] .25 +Participants are also suggested to download the materials and install TVB locally in case of connection issues. The installation can be done via the following link: [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software>>https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software]] . 26 26 27 27 = References = 28 28 29 -((( 30 -* Baspinar, E., Cecchini, G., DePass, M., Andujar, M., Pani, P., Ferraina, S., Moreno-Bote, R., Cos, I., Destexhe, A. (2023). [[A biologically plausible decision-making model based on interacting cortical columns>>https://www.biorxiv.org/content/10.1101/2023.02.28.530384v2]]. bioRxiv, 2023-02. 31 -* Di Volo, M., Romagnoni, A., Capone, C., Destexhe, A. (2019). [[Biologically realistic mean-field models of conductance-based networks of spiking neurons with adaptation>>https://direct.mit.edu/neco/article-abstract/31/4/653/8461/Biologically-Realistic-Mean-Field-Models-of?redirectedFrom=fulltext]]. Neural Computation, 31(4), 653-680. 32 -* Goldman, J. S., Kusch, L., Aquilue, D., Yalçınkaya, B. H., Depannemaecker, D., Ancourt, K., Nghiem, T. E., Jirsa, V., Destexhe, A. (2023). [[A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics>>https://www.frontiersin.org/articles/10.3389/fncom.2022.1058957/full]]. Frontiers in Computational Neuroscience, 16, 1058957. 33 -* Lavanga M., Stumme J., Yalcinkaya B. H., Fousek J., Jockwitz C., Sheheitli H., Bittner N., Hashemi M., Petkoski S., Caspers S., Jirsa V. (2023). [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>url:https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage, 283, 120403. 34 -* Sacha, M., Goldman, J. S., Kusch, L., Destexhe, A. (2024). [[Asynchronous and slow-wave oscillatory states in connectome-based models of mouse, monkey and human cerebral cortex>>https://www.mdpi.com/2076-3417/14/3/1063]]. Applied Sciences, 14(3), 1063. 35 -* Sanz-Leon P., Knock S. A., Spiegler A., Jirsa V. K. (2015). [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>url:https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. NeuroImage, 111, 385-430. 36 -* Schirner M., Domide L., Perdikis D., Triebkorn P., Stefanovski L., Pai R., Prodan P., Valean B., Palmer J., Langford C., Blickensdörfer A. (2022). [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>url:https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage, 251, 118973. 37 -* Wang H. E., Triebkorn P., Breyton M., Dollomaja B., Lemarechal J. D., Petkoski S., Sorrentino P., Depannemaecker D., Hashemi M., Jirsa V. K. (2024). [[Virtual brain twins: from basic neuroscience to clinical use>>url:https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review, 11(5), nwae079. 29 +* ((( 30 +Sanz-Leon P., Knock S. A., Spiegler A., Jirsa V. K. (2015) [[Mathematical framework for large-scale brain network modeling in The Virtual Brain>>url:https://www.sciencedirect.com/science/article/pii/S1053811915000051]]. Neuroimage. 2015 May 1; 111:385-430. 38 38 ))) 32 +* ((( 33 +Schirner M, Domide L, Perdikis D, Triebkorn P, Stefanovski L, Pai R, Prodan P, Valean B, Palmer J, Langford C, Blickensdörfer A. [[Brain simulation as a cloud service: The Virtual Brain on EBRAINS>>url:https://www.sciencedirect.com/science/article/pii/S1053811922001021]]. NeuroImage. 2022 May 1;251:118973. 34 +))) 35 +* ((( 36 +Lavanga M, Stumme J, Yalcinkaya BH, Fousek J, Jockwitz C, Sheheitli H, Bittner N, Hashemi M, Petkoski S, Caspers S, Jirsa V. [[The virtual aging brain: Causal inference supports interhemispheric dedifferentiation in healthy aging>>url:https://www.sciencedirect.com/science/article/pii/S1053811923005542]]. NeuroImage. 2023 Dec 1;283:120403. 37 +))) 38 +* ((( 39 +Wang HE, Triebkorn P, Breyton M, Dollomaja B, Lemarechal JD, Petkoski S, Sorrentino P, Depannemaecker D, Hashemi M, Jirsa VK. [[Virtual brain twins: from basic neuroscience to clinical use>>url:https://academic.oup.com/nsr/article/11/5/nwae079/7616087]]. National Science Review. 2024 May;11(5):nwae079. 40 +))) 41 +* ((( 42 +Baspinar, E., Cecchini, G., DePass, M., Andujar, M., Pani, P., Ferraina, S., Moreno-Bote, R., Cos, I., Destexhe, A. (2023). A biologically plausible decision-making model based on interacting cortical columns. bioRxiv, 2023-02. 39 39 40 -((( 41 - 44 +[3]: Di Volo, M., Romagnoni, A., Capone, C., Destexhe, A. (2019). Biologically realistic mean-field models of conductance-based networks of spiking neurons with adaptation. Neural Computation, 31(4), 653-680. 45 + 46 +[1]: Goldman, J. S., Kusch, L., Aquilue, D., Yalçınkaya, B. H., Depannemaecker, D., Ancourt, K., Nghiem, T. E., Jirsa, V., Destexhe, A. (2023). A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics. Frontiers in Computational Neuroscience, 16, 1058957. 42 42 ))) 48 +* ((( 49 +[2]: Sacha, M., Goldman, J. S., Kusch, L., Destexhe, A. (2024). Asynchronous and slow-wave oscillatory states in connectome-based models of mouse, monkey and human cerebral cortex. Applied Sciences, 14(3), 1063. 43 43 ))) 51 +))) 44 44 45 45 46 46 (% class="col-xs-12 col-sm-4" %)