Changes for page Elephant Tutorials
Last modified by denker on 2025/04/09 07:02
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... ... @@ -12,18 +12,17 @@ 12 12 ((( 13 13 (% class="col-xs-12 col-sm-8" %) 14 14 ((( 15 -= =A resource for kick-starting work withthe Elephantlibrary==15 += The Elephant and = 16 16 17 17 The Python library [[Electrophysiology Analysis Toolkit (Elephant)>>https://python-elephant.org||rel=" noopener noreferrer" target="_blank"]] provides tools for the analysis of neuronal activity data, such as spike trains, local field potentials and intracellular data. In addition to providing a platform for sharing analysis codes from different laboratories, Elephant provides a consistent and homogeneous framework for data analysis, built on a modular foundation. The underlying data model is the Neo library, a framework which easily captures a wide range of neuronal data types and methods, including dozens of file formats and network simulation tools. A common data description, as provided by the Neo library, is essential for developing interoperable analysis workflows. 18 18 19 -In this collaborativespace, we provide hands on video tutorials based on Jupyter notebooksthat showcase various types of data analysis,from simple to advanced. Most notebooksare based onacommondataset published at [[https:~~/~~/gin.g-node.org/INT/multielectrode_grasp>>https://gin.g-node.org/INT/multielectrode_grasp]] (for details cf. Brochier et al (2018) Scientific Data 5, 180055. [[https:~~/~~/doi.org/10.1038/sdata.2018.55>>url:https://doi.org/10.1038/sdata.2018.55]]).All video tutorials are approximately 30 minutes in length.19 +In this space, we provide hands on video tutorials based on Jupyter notebooks on performing various types of data analysis based on the dataset published at [[https:~~/~~/gin.g-node.org/INT/multielectrode_grasp>>https://gin.g-node.org/INT/multielectrode_grasp]] (for details cf. Brochier et al (2018) Scientific Data 5, 180055. [[https:~~/~~/doi.org/10.1038/sdata.2018.55>>url:https://doi.org/10.1038/sdata.2018.55]]). 20 20 21 -= =Access tothematerial==21 += Who has access? = 22 22 23 - To access the tutorials,check out the drive space of this Collab. Videoare available for download inthe(% style="color:#f39c12" %)videos(%%) section, whereas the corresponding Jupyter notebooks are available in the (% style="color:#f39c12" %)notebooks(%%) folder. Notebooks can either be rundirectly on theCollaboratory (currently limited to HBP affiliatedmembers), or downloaded and run locally. For local execution, please use the provided (%style="color:#f39c12" %)requirements.txt(%%) file to generate an appropriate Python environment.23 +Describe the audience of this collab. 24 24 ))) 25 25 26 - 27 27 28 28 (% class="col-xs-12 col-sm-4" %) 29 29 (((