Changes for page Elephant Tutorials
Last modified by denker on 2025/04/09 07:02
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... ... @@ -18,10 +18,23 @@ 18 18 19 19 In this collaborative space, we provide hands on video tutorials based on Jupyter notebooks that showcase various types of data analysis, from simple to advanced. Most notebooks are based on a common dataset published at [[https:~~/~~/gin.g-node.org/INT/multielectrode_grasp>>https://gin.g-node.org/INT/multielectrode_grasp]] (for details cf. Brochier et al (2018) Scientific Data 5, 180055. [[https:~~/~~/doi.org/10.1038/sdata.2018.55>>url:https://doi.org/10.1038/sdata.2018.55]]). All video tutorials are approximately 30 minutes in length. 20 20 21 + 21 21 == Access to the tutorials == 22 22 23 -To access the tutorials, check out the drive space of this Collab. Video are available for download in the (% style="color:#f39c12" %)videos(%%) section, whereas the corresponding Jupyter notebooks are available in the (% style="color:#f39c12" %)notebooks(%%) folder. Notebooks can either be run directly on the Collaboratory (currently limited to HBP affiliated members), or downloaded and run locally. For local execution, please use the provided (% style="color:#f39c12" %)requirements.txt(%%) file to generate an appropriate Python environment. 24 +To access the tutorials, check out the drive space of this Collab. Video are available for download in the (% style="color:#f39c12" %)videos(%%) section, whereas the corresponding Jupyter notebooks are available in the (% style="color:#f39c12" %)notebooks(%%) folder. Notebooks can either be run directly on the EBRAINS Collaboratory (currently limited to HBP affiliated members), or downloaded and run locally. For local execution, please use the provided (% style="color:#f39c12" %)requirements.txt(%%) file to generate an appropriate Python environment. 24 24 26 +=== Execution on the EBRAINS Collaboratory === 27 + 28 +* Open the EBRAINS lab by selecting the corresponding (% style="color:#f39c12" %)Lab(%%) menu entry on the left. 29 +//Please note: Jupyterlab functionality is currently in beta and not yet available to non-HBP-affiliated Collaboratory users. Please check back in the near future.// 30 +* In the lab, navigate to a particular notebook and open and execute it. To save changes you may want to make, please create a copy of the notebook in a Collab of your own (i.e., where you have write permissions). 31 + 32 +=== Local execution === 33 + 34 +* Open the EBRAINS drive by selecting the corresponding (% style="color:#f39c12" %)Drive(%%) menu entry on the left. 35 +* Download a particular notebook and the (% style="color:#f39c12" %)requirements.txt(%%) to your computer. 36 +* Create a Python environment based on the (% style="color:#f39c12" %)requirements.txt(%%) file. The details will depend on your particular Python setup. 37 + 25 25 == List of available tutorials == 26 26 27 27