Changes for page Elephant Tutorials
Last modified by denker on 2025/04/09 07:02
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... ... @@ -2,9 +2,9 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= Elephant Tutorial Space = 5 += Elephant Tutorial Space[[image:https://elephant.readthedocs.io/en/latest/_static/elephant_logo_sidebar.png||alt="Elephant logo" style="float:right"]] = 6 6 7 -Video tutorials on data analysis using Elephant 7 +Video tutorials on neuronal data analysis using Elephant 8 8 ))) 9 9 ))) 10 10 ... ... @@ -23,33 +23,32 @@ 23 23 24 24 To access the tutorials, check out the drive space of this Collab. Video are available for download in the (% style="color:#f39c12" %)videos(%%) section, whereas the corresponding Jupyter notebooks are available in the (% style="color:#f39c12" %)notebooks(%%) folder. Notebooks can either be run directly on the EBRAINS Collaboratory (currently limited to HBP affiliated members), or downloaded and run locally. For local execution, please use the provided (% style="color:#f39c12" %)requirements.txt(%%) file to generate an appropriate Python environment. 25 25 26 -=== =Execution on the EBRAINS Collaboratory ====26 +=== Execution on the EBRAINS Collaboratory === 27 27 28 28 * Open the EBRAINS lab by selecting the corresponding (% style="color:#f39c12" %)Lab(%%) menu entry on the left. 29 29 //Please note: Jupyterlab functionality is currently in beta and not yet available to non-HBP-affiliated Collaboratory users. Please check back in the near future.// 30 30 * In the lab, navigate to a particular notebook and open and execute it. To save changes you may want to make, please create a copy of the notebook in a Collab of your own (i.e., where you have write permissions). 31 31 32 -=== =Local execution ====32 +=== Local execution === 33 33 34 34 * Open the EBRAINS drive by selecting the corresponding (% style="color:#f39c12" %)Drive(%%) menu entry on the left. 35 35 * Download a particular notebook and the (% style="color:#f39c12" %)requirements.txt(%%) to your computer. 36 36 * Create a Python environment based on the (% style="color:#f39c12" %)requirements.txt(%%) file. The details will depend on your particular Python setup. 37 37 38 - 39 39 == List of available tutorials == 40 40 41 41 42 42 (% style="margin-right:auto" %) 43 43 |=(% style="width: 300px;" %)Tutorial|=(% style="width: 267px;" %)Hosts and Authors|=(% style="width: 626px;" %)Content 44 -|(% style="width:300px" %) Elephant_Tutorial_-_LFP_analysis|(% style="width:267px" %)Robin Gutzen|(% style="width:626px" %)Apply basic LFP analysis techniques, such as power spectra.45 -|(% style="width:300px" %) Elephant_Tutorial_-_Spike_analysis|(% style="width:267px" %)(((43 +|(% style="width:300px" %)LFP_analysis|(% style="width:267px" %)Robin Gutzen|(% style="width:626px" %)Apply basic LFP analysis techniques, such as power spectra. 44 +|(% style="width:300px" %)Spike_analysis|(% style="width:267px" %)((( 46 46 Cristiano Köhler 47 47 Alexander Kleinjohann 48 48 )))|(% style="width:626px" %)Perform basic statistical analysis of spike trains from rate profiles to pair-wise correlations. 49 -|(% style="width:300px" %) Elephant_Tutorial_-_Spatio-temporal_spike_patterns|(% style="width:267px" %)Regimatas Jurkus48 +|(% style="width:300px" %)Spatio-temporal_spike_patterns|(% style="width:267px" %)Regimatas Jurkus 50 50 Alessandra Stella|(% style="width:626px" %)Highlights two methods for detecting hidden spatio-temporal patterns in spike data. 51 -|(% style="width:300px" %) Elephant_Tutorial_-_GPFA|(% style="width:267px" %)Simon Essink|(% style="width:626px" %)Extract low-dimensional rate trajectories from the population spike activity.52 -|(% style="width:300px" %) Elephant_Tutorial_-_Surrogate_techniques|(% style="width:267px" %)Peter Bouss|(% style="width:626px" %)Learn how to use different surrogate methods for spike trains to assist in formulating statistical null hypotheses in the presence of non-stationarity.50 +|(% style="width:300px" %)GPFA|(% style="width:267px" %)Simon Essink|(% style="width:626px" %)Extract low-dimensional rate trajectories from the population spike activity. 51 +|(% style="width:300px" %)Surrogate_techniques|(% style="width:267px" %)Peter Bouss|(% style="width:626px" %)Learn how to use different surrogate methods for spike trains to assist in formulating statistical null hypotheses in the presence of non-stationarity. 53 53 54 54 55 55 )))