Changes for page Practical Guide to Using the EBRAINS Knowledge Graph in (your) Research - User Examples
Last modified by maaike on 2022/07/05 20:42
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... ... @@ -40,7 +40,7 @@ 40 40 41 41 [[image:SearchStep1-3.png||alt="Steps 1-3: Refine search" height="398" width="700"]] 42 42 43 -You can refine you search even further by using the free text search. Based on your search criteria, you get a number of hits. 43 +You can refine you search even further by using the free text search. Based on your search criteria, you get a number of hits. ([[https:~~/~~/search.kg.ebrains.eu/?facet_type[0]=Dataset&facet_Dataset_modalityForFilter[0]=electrophysiology&facet_Dataset_speciesFilter[0]=Mus%20musculus>>https://search.kg.ebrains.eu/?facet_type[0]=Dataset&facet_Dataset_modalityForFilter[0]=electrophysiology&facet_Dataset_speciesFilter[0]=Mus%20musculus]]) 44 44 45 45 ==== Select a dataset ==== 46 46 ... ... @@ -50,7 +50,7 @@ 50 50 51 51 ==== Access detailed metadata ==== 52 52 53 -In the side panel, you can find an overview of the metadata that is available for this dataset. For example: 53 +In the side panel, you can find an overview of the metadata that is available for this dataset ([[https:~~/~~/search.kg.ebrains.eu/instances/7866daf2-7064-4fa0-b6a2-0b1c899ba35f>>https://search.kg.ebrains.eu/instances/7866daf2-7064-4fa0-b6a2-0b1c899ba35f]]). For example: 54 54 55 55 1. The data descriptor is a pdf text file with detailed information about the dataset, including the methods, technical validation, usage notes and data organisation. 56 56 1. Detailed subject metadata can be found in a separate tab (see below). ... ... @@ -76,6 +76,29 @@ 76 76 77 77 Go to the Query Builder: [[https:~~/~~/query.kg.ebrains.eu>>https://query.kg.ebrains.eu/#state=6a41dd5b-3cf9-4263-8a65-83d41f27677a&session_state=638c33f5-4551-4d70-8b1d-a5c900aa62d0&code=300f25d8-caac-4576-9a21-195ccc93fd31.638c33f5-4551-4d70-8b1d-a5c900aa62d0.4214dba9-b6d0-4331-9837-3e75a10cda14]] 78 78 79 + 80 +==== Select a category ==== 81 + 82 +A query for the Knowledge Graph is always executed against a specific data structure (e.g. a "Dataset version"). First select the data structure for your query. 83 + 84 +[[image:QB1.png||alt="Step 1: Select a category" height="520" width="700"]] 85 + 86 + 87 +==== Select an experimental approach ==== 88 + 89 +Similar to the facetted filters in the Knowledge Graph Search UI, we can refine our query by defining the experimental approach of our interest, for example electrophysiology. 90 + 91 +To ensure that all dataset versions with electrophysiology are queried, and none of the dataset versions without electrophysiology, we make this property required and we apply a filter to the label we are searching for (i.e. electrophysiology). 92 + 93 +[[image:QBstep2.png||alt="Step 2: Select modality" height="541" width="700"]] 94 + 95 + 96 +==== Select species ==== 97 + 98 +Similarly, we can refine our query for mice only. 99 + 100 +[[image:QBstep3.png||alt="Step 3: Select species" height="543" width="700"]] 101 + 79 79 = Who has access? = 80 80 81 81 Describe the audience of this collab.
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