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Changes for page Atlas pipeline workflow

Last modified by drodarie on 2023/11/13 12:31
From version 17.2
edited by drodarie
on 2023/03/26 17:04
Change comment: There is no comment for this version
To version 18.1
edited by drodarie
on 2023/03/26 17:05
Change comment: There is no comment for this version

Summary

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Content
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31 31  * (% style="color:#999999" %)How to estimate neuron sub-type densities based on literature findings (second introduction to (%%)[[atlas-densities>>https://github.com/BlueBrain/atlas-densities]](% style="color:#999999" %)).
32 32  * (% style="color:#999999" %)How to refine neuron densities based on linear densities.
33 33  * (% style="color:#999999" %)How to scale, rotate and bend neuron morphologies, based on the orientation and depth fields.
34 -* (% style="color:#999999" %)How to construct a circuit based on the resulting cell atlas model in BSB.
34 +* (% style="color:#999999" %)How to construct a circuit based on the resulting cell atlas model in [[BSB>>https://github.com/dbbs-lab/bsb]].
35 35  
36 36  Each item in the list correspond to a notebook in the lab. Items in grey are notebooks still in preparation and will be integrated in the HBP collab, as soon as possible.
37 37