Last modified by pierstanpaolucci on 2023/06/29 18:29
From version 12.1
edited by pierstanpaolucci
on 2021/09/21 15:45
Change comment: There is no comment for this version
To version 20.1
edited by cristianocapone
on 2021/09/22 10:57
Change comment: Uploaded new attachment "example2.png", version {1}

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1 +XWiki.cristianocapone
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3 3  (% class="container" %)
4 4  (((
5 5  (% class="lead" id="HInteractiveExplorationofBrainStatesandSpatio-TemporalActivityPatternsinData-ConstrainedSimulations" %)
6 -Explore brain states and spatio-temporal cortical activity patterns on your own
6 +Open the Lab link on the left to explore brain states and spatio-temporal cortical activity patterns on your own
7 7  )))
8 8  )))
9 9  
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11 11  (((
12 12  (% class="col-xs-12 col-sm-8" %)
13 13  (((
14 -= Open the Lab link on the left to launch the interactive simulation =
14 +**How the same network can generate different brain states with their specific propagation patterns and rhythms?**
15 15  
16 -How the same network can generate different brain states with their specific propagation patterns and rhythms?
17 -
18 18  In this Jupyter Lab the user can interactively change the neuromodulated fatigue parameters and observe in real-time the emergence of different categories of slow- wave wave-propagation patterns and the transition to an asynchronous regime on a columnar mean-field model equipped with lateral connections inferred from experimentally acquired cortical activity.
19 19  
20 20  The model displays the dorsal view of a mouse cortical hemisphere sampled by pixels of 100-micron size over a 25 mm2 field of view.
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23 23  
24 24  The experimental data set from which the model has been inferred has been provided by LENS and it is available in the EBRAINS KG (2)
25 25  
24 +The predecessor of this model can be found at (3)
25 +
26 +The latest version of the code presented in the drive of this collab can be found at (4)
27 +
26 26  (1) Capone, C. et al. (2021) “Simulations Approaching Data: Cortical Slow Waves in Inferred Models of the Whole Hemisphere of Mouse” arXiv:2104.07445 [[https:~~/~~/arxiv.org/abs/2104.07445>>https://arxiv.org/abs/2104.07445]]
27 27  
28 28  (2) Resta, F., Allegra Mascaro, A. L., & Pavone, F. (2020). //Study of Slow Waves (SWs) propagation through wide-field calcium imaging of the right cortical hemisphere of GCaMP6f mice// [Data set]. EBRAINS. [[DOI: 10.25493/3E6Y-E8G>>url:https://doi.org/10.25493%2F3E6Y-E8G]]
29 29  
30 -= =
32 +(3) Mean Field Simulation of whole mouse hemisphere with parameters inferred from optical recordings [[https:~~/~~/search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4>>https://search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4]]
33 +
34 +(% class="wikigeneratedid" id="H" %)
35 +(4) [[https:~~/~~/github.com/APE-group/InteractiveExplorationBrainStates>>https://github.com/APE-group/InteractiveExplorationBrainStates]]
31 31  )))
32 32  
33 -
34 34  (% class="col-xs-12 col-sm-4" %)
35 35  (((
36 36  {{box title="**Contents**"}}
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