Changes for page Interactive Exploration of Brain States and Spatio-Temporal Activity Patterns in Data-Constrained Simulations
Last modified by pierstanpaolucci on 2023/06/29 18:29
From version 16.1
edited by pierstanpaolucci
on 2021/09/22 10:43
on 2021/09/22 10:43
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To version 18.1
edited by pierstanpaolucci
on 2021/09/22 10:49
on 2021/09/22 10:49
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... ... @@ -3,7 +3,7 @@ 3 3 (% class="container" %) 4 4 ((( 5 5 (% class="lead" id="HInteractiveExplorationofBrainStatesandSpatio-TemporalActivityPatternsinData-ConstrainedSimulations" %) 6 - (%style="background-color:#ffffff;color:#f39c12"%)Explore brain states and spatio-temporal cortical activity patterns on your own6 +Open the Lab link on the left to explore brain states and spatio-temporal cortical activity patterns on your own 7 7 ))) 8 8 ))) 9 9 ... ... @@ -11,11 +11,8 @@ 11 11 ((( 12 12 (% class="col-xs-12 col-sm-8" %) 13 13 ((( 14 -(% class="lead" id="HOpentheLablinkonthelefttolaunchtheinteractivesimulation" %) 15 -Open the Lab link on the left to launch the interactive simulation 14 +**How the same network can generate different brain states with their specific propagation patterns and rhythms?** 16 16 17 -How the same network can generate different brain states with their specific propagation patterns and rhythms? 18 - 19 19 In this Jupyter Lab the user can interactively change the neuromodulated fatigue parameters and observe in real-time the emergence of different categories of slow- wave wave-propagation patterns and the transition to an asynchronous regime on a columnar mean-field model equipped with lateral connections inferred from experimentally acquired cortical activity. 20 20 21 21 The model displays the dorsal view of a mouse cortical hemisphere sampled by pixels of 100-micron size over a 25 mm2 field of view. ... ... @@ -26,6 +26,8 @@ 26 26 27 27 The predecessor of this model can be found at (3) 28 28 26 +The latest version of the code presented in the drive of this collab can be found at (4) 27 + 29 29 (1) Capone, C. et al. (2021) “Simulations Approaching Data: Cortical Slow Waves in Inferred Models of the Whole Hemisphere of Mouse” arXiv:2104.07445 [[https:~~/~~/arxiv.org/abs/2104.07445>>https://arxiv.org/abs/2104.07445]] 30 30 31 31 (2) Resta, F., Allegra Mascaro, A. L., & Pavone, F. (2020). //Study of Slow Waves (SWs) propagation through wide-field calcium imaging of the right cortical hemisphere of GCaMP6f mice// [Data set]. EBRAINS. [[DOI: 10.25493/3E6Y-E8G>>url:https://doi.org/10.25493%2F3E6Y-E8G]] ... ... @@ -32,10 +32,10 @@ 32 32 33 33 (3) Mean Field Simulation of whole mouse hemisphere with parameters inferred from optical recordings [[https:~~/~~/search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4>>https://search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4]] 34 34 35 -= = 34 +(% class="wikigeneratedid" id="H" %) 35 +(4) [[https:~~/~~/github.com/APE-group/InteractiveExplorationBrainStates>>https://github.com/APE-group/InteractiveExplorationBrainStates]] 36 36 ))) 37 37 38 - 39 39 (% class="col-xs-12 col-sm-4" %) 40 40 ((( 41 41 {{box title="**Contents**"}}