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Last modified by pierstanpaolucci on 2023/06/29 18:29
From version 28.1
edited by pierstanpaolucci
on 2021/09/25 15:19
Change comment: There is no comment for this version
To version 25.1
edited by cristianocapone
on 2021/09/23 13:36
Change comment: There is no comment for this version

Summary

Details

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Author
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1 -XWiki.pierstanpaolucci
1 +XWiki.cristianocapone
Content
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3 3  (% class="container" %)
4 4  (((
5 5  (% class="lead" id="HInteractiveExplorationofBrainStatesandSpatio-TemporalActivityPatternsinData-ConstrainedSimulations" %)
6 -Open the Lab link on the left to explore brain states and spatio-temporal cortical activity patterns on your own.
6 +Open the Lab link on the left to explore brain states and spatio-temporal cortical activity patterns on your own
7 7  )))
8 8  )))
9 9  
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29 29  
30 30  The latest version of the code presented in the drive of this collab can be found at (4).
31 31  
32 -This model is developed in the framework of the "Slow Waves, Brain States Transitions, Cognitive Functions and Complexity" Use Case collaboration that aims to the integration of experimental data, models and analysis pipelines in a multi-scale, multi-methodology approach.
32 +(1) Capone, C. et al. (2021) “Simulations Approaching Data: Cortical Slow Waves in Inferred Models of the Whole Hemisphere of Mouse” arXiv:2104.07445 [[https:~~/~~/arxiv.org/abs/2104.07445>>https://arxiv.org/abs/2104.07445]]
33 33  
34 -"Slow Waves, Brain States Transitions, Cognitive Functions and Complexity" Use Case Coordinator/s: Pier Stanislao Paolucci, Michael Denker. Technical Coordinators: Giulia De Bonis, Robin Gutzen, Elena Pastorelli, Arnau Manasanch Berengué
35 -
36 -Use Case Authors: Giulia De Bonis, Robin Gutzen, Cristiano Capone, Chiara De Luca, Elena Pastorelli, Arnau Manasanch Berengué, Pau Gorostiza, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Pavone, Andrew Davison, Johan Storm, Alessandro Arena, Andrea Pigorini, Thierry Nieus, Ezequiel Mikulan, Marcello Massimini, Maurizio Mattia, Michael Denker, Pier Stanislao Paolucci, Alain Destexhe, Maria V. Sanchez-Vives.
37 -
38 -Institutions: INFN, JUELICH, IDIBAPS, ISS, UMIL, LENS, UiO, CNRS, UNIROMA1.
39 -
40 -(1) Cristiano Capone, Chiara De Luca, Giulia De Bonis, Elena Pastorelli, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Pavone, Pier Stanislao Paolucci (2021) “Simulations Approaching Data: Cortical Slow Waves in Inferred Models of the Whole Hemisphere of Mouse” arXiv:2104.07445 [[https:~~/~~/arxiv.org/abs/2104.07445>>https://arxiv.org/abs/2104.07445]]
41 -
42 42  (2) Resta, F., Allegra Mascaro, A. L., & Pavone, F. (2020). //Study of Slow Waves (SWs) propagation through wide-field calcium imaging of the right cortical hemisphere of GCaMP6f mice// [Data set]. EBRAINS. [[DOI: 10.25493/3E6Y-E8G>>url:https://doi.org/10.25493%2F3E6Y-E8G]]
43 43  
44 44  (3) Mean Field Simulation of whole mouse hemisphere with parameters inferred from optical recordings [[https:~~/~~/search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4>>https://search.kg.ebrains.eu/instances/e572362f-9461-4f9d-81e2-b69cd44185f4]]
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 -A Jupyter notebook where the user can interactively change the neuromodulated fatigue parameters and observe in real-time the emergence of different categories of slow-wave wave-propagation patterns and the transition to an asynchronous regime on a columnar mean-field model equipped with lateral connections inferred from experimentally acquired cortical activity. Dorsal view of a mouse cortical hemisphere sampled by pixels of 100-micron size over a 25 mm^2 field of view.
1 +A jupyter lab notebook where the user can interactively change the neuromodulated fatigue parameters and observe in real-time the emergence of different categories of slow-wave wave-propagation patterns and the transition to an asynchronous regime on a columnar mean-field model equipped with lateral connections inferred from experimentally acquired cortical activity. Dorsal view of a mouse cortical hemisphere sampled by pixels of 100-micron size over a 25 mm^2 field of view.