Changes for page kg-spatial-search
Last modified by oschmid on 2023/08/22 11:23
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... ... @@ -26,14 +26,13 @@ 26 26 27 27 = How do I query the KG Spatial Search? = 28 28 29 -Simply use the API endpoint at [[https:~~/~~/spatial.kg.ebrains.eu/a pi/>>https://spatial.kg.ebrains.eu/api/]] by running queries according to the following examples:29 +Simply use the API endpoint at [[https:~~/~~/spatial.kg.ebrains.eu/cores/ebrains/spatial_objects>>https://spatial.kg.ebrains.eu/spatial_objects]] by running queries according to the following examples: 30 30 31 - 32 32 == Get started: Query by a "bounding box" (hyperrectangle) == 33 33 34 34 {{code language="bash" layout="LINENUMBERS"}} 35 35 curl -X 'POST' \ 36 - 'https://spatial.kg.ebrains.eu/ spatial-search/cores/ebrains/spatial_objects' \35 + 'https://spatial.kg.ebrains.eu/cores/ebrains/spatial_objects' \ 37 37 -H 'accept: application/json' \ 38 38 -H 'Content-Type: application/json' \ 39 39 -d '{ ... ... @@ -43,7 +43,6 @@ 43 43 44 44 As you can see, you're sending a POST request to the endpoint at **https:~/~/spatial.kg.ebrains.eu/spatial-search/cores/ebrains/spatial_objects **with a payload defining a geometry of interest. In this case, we're looking for all objects that are **inside **a **hyperrectangle **defined by its lowest and highest point in the coordinate system of the coordinate space **AMB-CCF_v3-RAS**. This query will return you an array of ids of the objects located within the geometry which you then can use to conveniently query the KG either through the [[Instance API>>https://core.kg.ebrains.eu/swagger-ui/index.html#/2%20Advanced/getInstancesByIds]] or the [[Query API>>https://core.kg.ebrains.eu/swagger-ui/index.html#/1%20Basic/runDynamicQuery]] to access detailed meta information. 45 45 46 - 47 47 == Query by hypersphere == 48 48 49 49 Alongside the possibility to use hyperrectangles for querying the spatial search, you can also use hyperspheres: ... ... @@ -56,8 +56,6 @@ 56 56 57 57 It is defined by the center of the sphere with its coordinates, the radius in coordinate units and the coordinate space of the given coordinates (in this case again AMB-CCF_v3-RAS) 58 58 59 - 60 - 61 61 == Advanced use: Union geometries for complex queries == 62 62 63 63 To build arbitrarily complex geometries, it is possible to combine hyperrectangles and hyperspheres via (nested) unions: ... ... @@ -68,9 +68,39 @@ 68 68 } 69 69 {{/code}} 70 70 67 +== How to get the available spaces? == 71 71 69 +To get a list of available spaces (to know which coordinate systems are available), please run 72 72 71 +{{code language="bash" layout="LINENUMBERS"}} 72 +curl -X 'POST' \ 73 + 'https://spatial.kg.ebrains.eu/spaces' \ 74 + -H 'accept: application/json' \ 75 + -H 'Content-Type: application/json' \ 76 + -d '{}' 77 +{{/code}} 73 73 79 +to retrieve a list of spaces. To get more information about the space, you can then ask for a specific one with 80 + 81 +{{code language="bash" layout="LINENUMBERS"}} 82 +curl -X 'GET' \ 83 + 'https://spatial.kg.ebrains.eu/spaces/AMB-CCF_v3-RAS' \ 84 + -H 'accept: application/json' \ 85 + -H 'Content-Type: application/json' 86 +{{/code}} 87 + 88 + 89 += Technical details of the ingestion pipeline = 90 + 91 +The current pipeline is regularly parsing locareJSON files registered in the KG. 92 + 93 +* Points are translated to the data structure of spatial search without manipulation 94 +* Polyhedrons are translated via the [[vtk>>https://pypi.org/project/vtk/]] library into a point cloud of (currently) a density of 1 coordinate unit (by ray-casting on an obb-tree) 95 +* Other geometries are work-in-progress 96 + 97 +The resulting files (all representing point-clouds) as well as the space definitions are uploaded to the [[bucket of this collab>>https://data-proxy.ebrains.eu/kg-spatial-search]]. A cron job running on the spatial search server pulls the files from the repo and rebuilds the databases index in regular intervals. 98 + 99 + 74 74 75 75 ))) 76 76