Changes for page kg-spatial-search

Last modified by oschmid on 2023/08/22 11:23

From version 14.1
edited by oschmid
on 2023/08/22 09:35
Change comment: There is no comment for this version
To version 7.4
edited by oschmid
on 2023/08/22 09:22
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -28,9 +28,10 @@
28 28  
29 29  Simply use the API endpoint at [[https:~~/~~/spatial.kg.ebrains.eu/api/>>https://spatial.kg.ebrains.eu/api/]] by running queries according to the following examples:
30 30  
31 -== Get started: Query by a "bounding box" (hyperrectangle) ==
32 32  
33 -{{code language="bash" layout="LINENUMBERS"}}
32 +==== Get started: Query by a "bounding box" (hyperrectangle) ====
33 +
34 +{{code}}
34 34  curl -X 'POST' \
35 35   'https://spatial.kg.ebrains.eu/spatial-search/cores/ebrains/spatial_objects' \
36 36   -H 'accept: application/json' \
... ... @@ -42,11 +42,12 @@
42 42  
43 43  As you can see, you're sending a POST request to the endpoint at **https:~/~/spatial.kg.ebrains.eu/spatial-search/cores/ebrains/spatial_objects  **with a payload defining a geometry of interest. In this case, we're looking for all objects that are **inside **a **hyperrectangle **defined by its lowest and highest point in the coordinate system of the coordinate space **AMB-CCF_v3-RAS**. This query will return you an array of ids of the objects located within the geometry which you then can use to conveniently query the KG either through the [[Instance API>>https://core.kg.ebrains.eu/swagger-ui/index.html#/2%20Advanced/getInstancesByIds]] or the [[Query API>>https://core.kg.ebrains.eu/swagger-ui/index.html#/1%20Basic/runDynamicQuery]] to access detailed meta information.
44 44  
45 -== Query by hypersphere ==
46 46  
47 +==== Query by hypersphere ====
48 +
47 47  Alongside the possibility to use hyperrectangles for querying the spatial search, you can also use hyperspheres:
48 48  
49 -{{code language="javascript" layout="LINENUMBERS"}}
51 +{{code}}
50 50  {
51 51   "filters": "inside(hypersphere{[50.0,146.0,227.0], 2, \"AMB-CCF_v3-RAS\"})"
52 52  }
... ... @@ -54,28 +54,28 @@
54 54  
55 55  It is defined by the center of the sphere with its coordinates, the radius in coordinate units and the coordinate space of the given coordinates (in this case again AMB-CCF_v3-RAS)
56 56  
57 -== Advanced use: Union geometries for complex queries ==
58 58  
60 +
61 +==== Advanced use: Union geometries for complex queries ====
62 +
59 59  To build arbitrarily complex geometries, it is possible to combine hyperrectangles and hyperspheres via (nested) unions:
60 60  
61 -{{code language="javascript" layout="LINENUMBERS"}}
65 +{{code}}
62 62  {
63 - "filters": "union(union(inside(hyperrectangle{[50.0,146.0,227.0], [51.0, 149.0, 228.0], \"AMB-CCF_v3-RAS\"}), inside(hyperrectangle{[120.0,146.0,227.0], [150.0, 180.0, 300.0], \"AMB-CCF_v3-RAS\"})),inside(hypersphere{[50.0,146.0,227.0], 2, \"AMB-CCF_v3-RAS\"}))"
67 + "filters": "
68 + union(
69 + union(
70 + inside(hyperrectangle{[50.0,146.0,227.0], [51.0, 149.0, 228.0], \"AMB-CCF_v3-RAS\"}),
71 + inside(hyperrectangle{[120.0,146.0,227.0], [150.0, 180.0, 300.0], \"AMB-CCF_v3-RAS\"})
72 + ),
73 + inside(hypersphere{[50.0,146.0,227.0], 2, \"AMB-CCF_v3-RAS\"})
74 + )"
64 64  }
65 65  {{/code}}
66 66  
67 67  
68 -= Technical details of the ingestion pipeline =
69 69  
70 -The current pipeline is regularly parsing locareJSON files registered in the KG.
71 71  
72 -* Points are translated to the data structure of spatial search without manipulation
73 -* Polyhedrons are translated via the [[vtk>>https://pypi.org/project/vtk/]] library into a point cloud of (currently) a density of 1 coordinate unit (by ray-casting on an obb-tree)
74 -* Other geometries are work-in-progress
75 -
76 -The resulting files (all representing point-clouds) as well as the space definitions are uploaded to the [[bucket of this collab>>https://data-proxy.ebrains.eu/kg-spatial-search]]. A cron job running on the spatial search server pulls the files from the repo and rebuilds the databases index in regular intervals.
77 -
78 -
79 79  
80 80  )))
81 81