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Changes for page LFPykit showcase

Last modified by ehagen on 2022/05/27 11:07

From version 4.3
edited by ehagen
on 2021/06/24 14:21
Change comment: There is no comment for this version
To version 4.1
edited by ehagen
on 2021/06/24 11:47
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="container" %)
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5 -= LFPykit showcase =
5 += My Collab's Extended Title =
6 6  
7 -Demonstration on how to run predictions using LFPykit ([[LFPykit.rtfd.io>>url:https://lfpy.rtfd.io/]], [[github.com/LFPy/LFPy>>url:https://github.com/LFPy/LFPy]]) on the Collaboratory.
8 -
9 -The LFPykit module provides electrostatic models in a manner that facilitates forward-model predictions of extracellular potentials and related measures from multicompartment neuron models, but without explicit dependencies on neural simulation software such as NEURON (https:~/~/neuron.yale.edu, https:~/~/github.com/neuronsimulator/nrn), Arbor (https:~/~/arbor.readthedocs.io, https:~/~/github.com/arbor-sim/arbor), and LFPy (https:~/~/LFPy.readthedocs.io, https:~/~/github.com/LFPy/LFPy)
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11 -To use this material, create a new collab and clone into it. Then the Python module can be installed as
12 -
13 -{{{!pip install . # or pip install LFPykit}}}
14 -
15 -in a jupyter notebook. Different usage with LFPy, NEURON and Arbor are provided in different notebooks located in the examples directory. Missing packages resulting in ImportError and similar can usually be installed issuing
16 -
17 -{{{!pip install <missing-package-name>}}}
18 -
19 -which may require a kernel restart to take effect.
7 +My collab's subtitle
20 20  )))
21 21  )))
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