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Changes for page Morphology Alignment Tool

Last modified by rbakker on 2023/07/17 12:44
From version 6.4
edited by rbakker
on 2023/07/17 11:03
Change comment: There is no comment for this version
To version 9.1
edited by rbakker
on 2023/07/17 11:08
Change comment: There is no comment for this version

Summary

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20 20  
21 21  2. the 'lab scale, hypothesis-driven approach', in which one or a few neurons are labeled in a particular area of interest, the **brain is sliced**, additionally stained and mounted on a glass slide, axons and dendrites are traced in 2d sections (e.g. using [[Neurolucida>>https://www.mbfbioscience.com/products/neurolucida/]]), pieces of axons are **stitched across sections**.
22 22  
23 -The Morphology Alignment Tools are made for automating the lab scale approach, and consists of
23 +The Morphology Alignment Tools are made for automating this second lab scale approach, and consists of
24 24  
25 -* Image preprocessing workflow.
25 +* [[Image preprocessing>>doc:.Image preprocessing.WebHome]] workflow.
26 26  * Image and 'pieces of neurite' alignment tool.
27 27  * Neuron morphology viewer that supports file format manipulations.
28 28  * Registration pipeline for stitched neuron and associated stack of low-resolution section images.