Changes for page Morphology Alignment Tool

Last modified by rbakker on 2023/07/17 12:44
From version 8.1
edited by rbakker
on 2023/07/17 11:05
Change comment: There is no comment for this version
To version 10.1
edited by rbakker
on 2023/07/17 11:26
Change comment: There is no comment for this version

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Morphology alignment tools =
5 += Tools for morphology alignment =
6 6  
7 7  Align axons and dendrites traced from a sectioned brain to a reference space.
8 8  )))
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22 22  
23 23  The Morphology Alignment Tools are made for automating this second lab scale approach, and consists of
24 24  
25 -* Image preprocessing workflow.
26 -* Image and 'pieces of neurite' alignment tool.
27 -* Neuron morphology viewer that supports file format manipulations.
25 +* [[Image preprocessing>>doc:.Image preprocessing.WebHome]] workflow.
26 +* Image and 'pieces of neurite' [[alignment tool>>doc:.Slice alignment tool.WebHome]].
27 +* [[Neuron morphology viewer>>https://neuroinformatics.nl/HBP/morphology-viewer-dev/]] that supports file format manipulations.
28 28  * Registration pipeline for stitched neuron and associated stack of low-resolution section images.
29 29  * Flatmap visualization tool in which the cortical distribution of the registered neuron can be shown in the Allen Mouse reference space CCF3.
30 30  * Database of long range projection neurons that have been registered to CCF3.