Changes for page 1. Image preprocessing

Last modified by rbakker on 2023/07/17 12:35
From version 1.1
edited by rbakker
on 2023/07/17 11:07
Change comment: There is no comment for this version
To version 2.2
edited by rbakker
on 2023/07/17 12:33
Change comment: Update document after refactoring.

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Title
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1 -Image preprocessing
1 +1. Image preprocessing
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1 -== Image preprocessing ==
1 +== 1. Image preprocessing ==
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4 -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
4 +To ensure consistent performance of our tools on a variety of images, we apply a standard preprocessing strategy that consists of the following steps:
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6 ->This is a quote. You can add a quote by selecting some text and clicking the quote button in the editor.
6 +* Invert so that background is black
7 +* Remove background gradient, by fitting a linear model through points sampled just outside the tissue
8 +* Remove background with OneCut (optional)
9 +* Enhance contrast with CLAHE (optional)
10 +* Resize images to common size
11 +* Center images
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8 -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
13 +The steps are implemented as part of the registration pipeline collab:
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10 -=== H3 Headings Will Appear In The Table of Content ===
11 -
12 -==== You can also add images ====
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14 -
15 -Photo by David Clode
16 -
17 -==== Or code ====
18 -
19 -Code blocks can be added by using the code macro:
20 -
21 -{{code language="python"}}
22 -x = 1
23 -if x == 1:
24 - # indented four spaces
25 - print("x is 1.")
26 -{{/code}}
27 -
28 -(% class="wikigeneratedid" id="HH4Won27tAppearinToC" %)
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15 +[[https:~~/~~/drive.ebrains.eu/d/67ca7ef8c35b45ec99b9/>>https://drive.ebrains.eu/d/67ca7ef8c35b45ec99b9/]]
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