Last modified by rbakker on 2022/05/23 22:23
From version 14.1
edited by mcpiastra
on 2021/12/20 13:11
Change comment: There is no comment for this version
To version 20.1
edited by rbakker
on 2022/01/25 00:39
Change comment: There is no comment for this version

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1 -XWiki.mcpiastra
1 +XWiki.rbakker
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23 23  
24 24  - projection of neuron-points into pixel coordinates in the associated experimental slice;
25 25  
26 -- QuickNII mapping between the atlas and the experimental slice;
26 +- QuickNII ([[https:~~/~~/ebrains.eu/service/quicknii-and-visualign/>>https://ebrains.eu/service/quicknii-and-visualign/]]) mapping between the atlas and the experimental slice;
27 27  
28 --  Elastix coregistration of images and, consequently, neuron-points;
28 +-  Elastix ([[https:~~/~~/simpleelastix.github.io/>>https://simpleelastix.github.io/]]) coregistration of images and, consequently, neuron-points;
29 29  
30 30  - linear mapping of the reconstructed neuron into the original shape;
31 31  
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35 35  
36 36  = For whom is this interesting? =
37 37  
38 -Neuroscientists and neuroanatomists interested in ...
38 +Neuroscientists and neuroanatomists working with neuronal morphologies and who would like to register their data to an atlas. In particular the Allen mouse atlas is very interesting because large numbers of neurons are already available in that space from two large initiatives: Mouselight ([[https:~~/~~/www.janelia.org/project-team/mouselight>>https://www.janelia.org/project-team/mouselight]]) and Braintell ([[https:~~/~~/doi.org/10.35077/g.25>>https://doi.org/10.35077/g.25]]).
39 39  )))
40 40  
41 41  
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