Attention: Due to an upgrade beginning on Friday, the 22nd August 2025, any new collabs, groups and any changes to teams will not be kept beyond the weekend. User creation will also be disabled during this time. The actual upgrade will take place on Wednesday, 27th August. On that day, any service requiring a Keycloak login will be unavailable for the duration of the upgrade. Thank you for your understanding as we complete this important work.


Last modified by petkoski on 2022/05/23 22:36

From version 3.1
edited by petkoski
on 2020/07/10 15:31
Change comment: There is no comment for this version
To version 43.1
edited by petkoski
on 2020/09/21 15:56
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -Mouse stroke Brain network model
1 +TVB Mouse stroke Brain network model
Content
... ... @@ -2,9 +2,9 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= My Collab's Extended Title =
5 += Mouse stroke Brain network model with TVB =
6 6  
7 -My collab's subtitle
7 +Brain Network Model (BNM) of Kuramoto oscillators for modelling functional reorganization in mice during stroke and recovery
8 8  )))
9 9  )))
10 10  
... ... @@ -12,24 +12,26 @@
12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What can I find here? =
15 += Scheme of the mouse BNM =
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
17 +[[image:mouseBNM.jpg]]
20 20  
21 -= Who has access? =
22 22  
23 -Describe the audience of this collab.
20 += =
21 +
22 +This collab contains a tutorial for simulating the whole-brain mouse dynamics during stroke and recovery, using the brain network model described (BNM) in Allegra Mascaro AL, Falotico E, Petkoski S, et al. "Experimental and computational study on motor control and recovery after stroke: towards a constructive loop between experimental and virtual embodied neuroscience." Front. Syst. Neurosci. (2020) [[https:~~/~~/doi.org/10.3389/fnsys.2020.00031>>url:https://doi.org/10.3389/fnsys.2020.00031]].
23 +
24 +It contains:
25 +
26 +* jupyter [[notebooks>>https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/Mouse%20stroke%20Brain%20network%20model]] with TVB
27 +* faster Matlab [[codes>>https://github.com/esaps/AllenMouse_strokeKuramoto]] implementation
28 +
29 +
24 24  )))
25 25  
26 26  
27 27  (% class="col-xs-12 col-sm-4" %)
28 28  (((
29 -{{box title="**Contents**"}}
30 -{{toc/}}
31 -{{/box}}
32 -
33 33  
34 34  )))
35 35  )))
mouseBNM.jpg
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.petkoski
Size
... ... @@ -1,0 +1,1 @@
1 +2.4 MB
Content
Collaboratory.Apps.Collab.Code.CollabClass[0]
Public
... ... @@ -1,1 +1,1 @@
1 -No
1 +Yes
XWiki.XWikiRights[2]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Groups
... ... @@ -1,0 +1,1 @@
1 +Collabs.mouse-stroke-brain-network-model._.groups.collab-mouse-stroke-brain-network-model-administrator
Levels
... ... @@ -1,0 +1,1 @@
1 +view,comment,edit,delete
XWiki.XWikiRights[3]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Levels
... ... @@ -1,0 +1,1 @@
1 +view
Users
... ... @@ -1,0 +1,1 @@
1 +XWiki.XWikiGuest
XWiki.XWikiRights[4]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Groups
... ... @@ -1,0 +1,1 @@
1 +XWiki.XWikiAllGroup
Levels
... ... @@ -1,0 +1,1 @@
1 +view