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15	15	(((
16	16	= What is this about and what can I find here? =
17	17
18		-== **Overview** ==
	18	+= **Overview** =
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	20	+
	21	+The classification and diagnosis of **central nervous system (CNS) diseases** have long been constrained by **traditional phenotype-based approaches**, which often fail to capture the **complex pathophysiological mechanisms, molecular biomarkers, and neuroanatomical changes** that drive disease progression. **Neurodegenerative and psychiatric disorders**, for example, exhibit significant **clinical overlap, co-pathology, and heterogeneity**, making current diagnostic models insufficient.
	22	+
	23	+This project proposes a **new diagnostic framework**—one that **shifts from symptom-based classifications** to an **etiology-driven, tridimensional system**. By integrating **genetics, proteomics, neuroimaging, computational modeling, and AI-powered annotations**, this approach aims to provide a **more precise, scalable, and biologically grounded method for diagnosing and managing CNS diseases**.
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	25	+The **AI-powered annotation system** plays a critical role by **structuring, interpreting, and tracking multi-modal data**, ensuring **real-time disease progression analysis, clinician decision support, and personalized treatment pathways**.
	26	+
	27	+=== **Project Aim** ===
	28	+
	29	+The project aims to develop a **tridimensional diagnostic framework** with an **AI-powered annotation system**, integrating **etiology, molecular biomarkers, and neuroanatomoclinical correlations** for **precise, standardized, and scalable CNS disease diagnostics**.
	30	+
20	20	The //Tridimensional Diagnostic Framework// redefines CNS diseases can be classified and diagnosed by focusing on:
21	21
22	22	* **Axis 1**: Etiology (genetic or other causes of diseases).
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29	29	* Integration of incomplete datasets using AI-driven probabilistic modeling.
30	30	* Stratification of patients for personalized treatment.
31	31
	43	+== **The Role of AI-Powered Annotation** ==
	44	+
	45	+To enhance **standardization, interpretability, and clinical application**, the framework integrates **an AI-powered annotation system**, which:
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	47	+* **Assigns structured metadata tags** to diagnostic features.
	48	+* **Provides real-time contextual explanations** for AI-based classifications.
	49	+* **Tracks longitudinal disease progression** using timestamped AI annotations.
	50	+* **Improves AI model transparency** through interpretability tools (e.g., SHAP analysis).
	51	+* **Facilitates decision-making for clinicians** by linking annotations to standardized biomedical ontologies (SNOMED, HPO).
	52	+
32	32	== **The case of neurodegenerative diseases** ==
33	33
34	34	There have been described these 3 diagnostic axes:
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64	64	* **Research**: By stratifying patients, reduces cohort heterogeneity in clinical trials.
65	65	* **Clinical Practice**: Provides dynamic diagnostic annotations with timestamps for longitudinal tracking.
66	66
67		-== Who has access? ==
68		-
69		-We welcome contributions from the global community. Let’s build the future of neurological diagnostics together!
70		-
71	71	== How to Contribute ==
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73	73	* Access the `/docs` folder for guidelines.
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79	79	* Develop interpretable AI models for diagnosis and progression tracking.
80	80	* Integrate data from Human Phenotype Ontology (HPO), Gene Ontology (GO), and other biomedical resources.
81	81	* Foster collaboration among neuroscientists, AI researchers, and clinicians.
	99	+
	100	+== Who has access? ==
	101	+
	102	+We welcome contributions from the global community. Let’s build the future of neurological diagnostics together!
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89	89	{{box title="**Contents**"}}