Wiki source code of Notebooks
Version 1.1 by manuelmenendez on 2025/02/02 00:43
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| author | version | line-number | content |
|---|---|---|---|
| 1 | ~== Neurodiagnoses: Jupyter Notebooks == | ||
| 2 | Welcome to the Jupyter Notebooks Hub for the Neurodiagnoses project. | ||
| 3 | Here, you will find a collection of AI-powered notebooks used for processing biomarkers, training AI models, and performing neuroimaging analysis. | ||
| 4 | |||
| 5 | ~-~-- | ||
| 6 | |||
| 7 | ~=== Available Notebooks === | ||
| 8 | Below is a list of Jupyter Notebooks available in EBRAINS. Click on any notebook to open it. | ||
| 9 | |||
| 10 | ~1. ~*~*Biomarker Classifier~*~* | ||
| 11 | Link: [Open Notebook](https:~/~/lab.jsc.ebrains.eu/hub/user-redirect/lab/tree/shared/Neurodiagnoses/biomarker_classifier.ipynb) | ||
| 12 | Description: Trains a machine learning model to classify patients based on biomarkers (Amyloid-beta, Tau, NFL). | ||
| 13 | Usage: Run all cells to train the model and generate predictions. | ||
| 14 | |||
| 15 | 2. ~*~*MRI Feature Extraction~*~* (Coming Soon) | ||
| 16 | Link: Notebook Link TBD | ||
| 17 | Description: Uses AI to extract neuroanatomical features from MRI scans. | ||
| 18 | Usage: Upload MRI data and run the script to generate reports. | ||
| 19 | |||
| 20 | 3. ~*~*EEG Analysis with Deep Learning~*~* (Coming Soon) | ||
| 21 | Link: Notebook Link TBD | ||
| 22 | Description: Uses deep learning models to analyze EEG patterns and detect abnormalities. | ||
| 23 | Usage: Load EEG recordings and apply pre-trained AI models. | ||
| 24 | |||
| 25 | ~-~-- | ||
| 26 | |||
| 27 | ~=== How to Run Notebooks === | ||
| 28 | To use the notebooks, follow these steps: | ||
| 29 | |||
| 30 | ~1. Click on a notebook link above to open it inside EBRAINS Jupyter Lab. | ||
| 31 | 2. If prompted, select the Python 3 (ipykernel) kernel. | ||
| 32 | 3. Run each cell sequentially (Shift + Enter). | ||
| 33 | 4. Check outputs and modify parameters as needed. | ||
| 34 | 5. Download results if necessary. | ||
| 35 | |||
| 36 | ~-~-- | ||
| 37 | |||
| 38 | ~=== Contribute a New Notebook === | ||
| 39 | Do you have a notebook to contribute? Follow these steps: | ||
| 40 | |||
| 41 | ~1. Create a new Jupyter Notebook in EBRAINS. | ||
| 42 | 2. Save it inside `/shared/Neurodiagnoses/`. | ||
| 43 | 3. Add the notebook link to this page. | ||
| 44 | 4. Ensure documentation is included in the first cell. | ||
| 45 | |||
| 46 | ~-~-- | ||
| 47 | |||
| 48 | ~=== Additional Resources === | ||
| 49 | - EBRAINS Jupyter Lab: [Visit Here](https:~/~/lab.jsc.ebrains.eu/) | ||
| 50 | - GitHub Repository: [Neurodiagnoses GitHub](https:~/~/github.com/manuelmenendezgonzalez/neurodiagnoses) | ||
| 51 | - Project Wiki: [Neurodiagnoses Wiki](https:~/~/wiki.ebrains.eu/bin/view/Collabs/neurodiagnoses/) | ||
| 52 |