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Wiki source code of QuickTry

Version 15.1 by kindler on 2025/09/08 14:16
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kindler 2.1 1 == "Quick Start" options ==
kindler 1.1 2
3 For a "quick start" without wait time for us to create a Collab for you we have these options:
4
5 === A non-persistent "quick first look" ===
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7 This method is **non-persistent **= whatever you change in the example notebooks **~*~*will be lost~*~*** when the session expires.
8
9 It is useful for a get-an-impression-fast:
10
kindler 15.1 11 For BrainScaleS:
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kindler 3.1 13 1. [[Access this URL>>https://lab.jsc.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Felectronicvisions%2Fbrainscales2-demos.git&urlpath=lab%2Ftree%2Fbrainscales2-demos.git%2Ftutorial.ipynb&branch=jupyter-notebooks-experimental]]: this will start a lab session - if no "Lab session" was yet running for your user you will be asked, which container to start. Please choose the one marked "recommended".
kindler 1.1 14 1. Access the same URL again (if a lab session was already running for your user you only need to access the URL once)
kindler 3.1 15 This automatically clones the BrainScaleS example notebooks ([[from github>>https://github.com/electronicvisions/brainscales2-demos.git]]) into the now running lab session into a //non-persistent// location and opens the **tutorial index notebook**.
kindler 1.1 16 You can also directly jump to e.g. the [[single neuron notebook>>https://lab.jsc.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Felectronicvisions%2Fbrainscales2-demos.git&urlpath=lab%2Ftree%2Fbrainscales2-demos.git%2Fts_00-single_neuron.ipynb&branch=jupyter-notebooks-experimental]] or the [[learning with superspike notebook>>https://lab.jsc.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Felectronicvisions%2Fbrainscales2-demos.git&urlpath=lab%2Ftree%2Fbrainscales2-demos.git%2Fts_01-superspike.ipynb&branch=jupyter-notebooks-experimental]].
kindler 3.1 17 To run the notebook cells use the "Run" menu item. To execute all cells of the notebook use the "Run > Run all" menu item in the Jupyter window.
kindler 1.1 18
kindler 15.1 19 (% class="wikigeneratedid" %)
20 For SpiNNaker:
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22 1. [[Access this URL>>https://lab.jsc.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2FSpiNNakerManchester%2FSpiNNakerJupyterExamples.git&urlpath=lab%2Ftree%2FSpiNNakerJupyterExamples.git%2FSpiNNaker_Collab_synfire.ipynb&branch=main]]: this will start a lab session - if no "Lab session" was yet running for your user you will be asked, which container to start. Please choose the one marked "recommended".
23 1. Access the same URL again (if a lab session was already running for your user you only need to access the URL once)
24 This automatically clones an example notebook for running a "synfire chain" on SpiNNaker ([[from github>>https://github.com/SpiNNakerManchester]]) into the now running lab session into a //non-persistent// location and open it.
25 To run the notebook cells use the "Run" menu item. To execute all cells of the notebook use the "Run > Run all" menu item in the Jupyter window.
26
kindler 1.1 27 === Getting the example notebooks into an own Collab ===
28
29 This method allows you to also change the example notebooks and **keep the changes**
30
31 1. create a new Collab for yourself:
32 11. go to [[https:~~/~~/wiki.ebrains.eu/>>https://wiki.ebrains.eu/]] and click the "Log-in" link in the upper right hand corner, log in with your new EBRAINS account
33 11. Click the "Collabs" link in the menu bar at the top of the window
34 11. Click the "Create a collab" green button and create a private Collab for yourself. The process re-directs you into the new Collab. 
35 1. In your new Collab open the Lab and clone the files you want to work with:
36 11. Click the "Lab" link in the left hand menu
37 [[image:1752049786563-126.png]]
38 11. Select any of the "Lab Execution Site" offered, [[image:1752049824848-523.png]]
39 then select the "Official EBRAINS Docker image", click start. (Click "Launch Server", if you get a "Server not running" page)
40 This will start a Jupyter Lab session (the "Lab") for you. 
41
42 11. Start a "Terminal" via the icon in the "Launcher window" shown. This opens a terminal in the "/mnt/user/shared/NAME_OF_YOUR_COLLAB/" directory. This is a location on the EBRAINS "Drive". Files stored in this location are stored persistently = will still be there, when you open your Collab again some days later 
43 Note: If you use "File" > "New" > "Terminal" the opened terminal is in the directory "/opt/app-root/src". This location only exists while the Jupyter ("Lab") session is running and will be gone, when a new Lab session is started. Do not use this location, if you want to keep the files. To change into the persistent directory type "cd /mnt/user/shared/NAME_OF_YOUR_COLLAB" (without the " and the name of your your Collab instead of NAME_OF_YOUR_COLLAB. The collab name in the screenshot is "20250709-testCollab")
44 [[image:1752049957171-549.png]]
45
46 11. then fetch the files you would like to work with.
47 \\For the **BrainScaleS-2 interactive notebooks** use the command in the terminal window: 
48 //git clone https:~/~/github.com/electronicvisions/brainscales2-demos.git ~-~-branch jupyter-notebooks-experimental//
49 [[image:1752049987784-838.png]]
50 \\The command clones the BrainScaleS interactive notebooks into a directory "brainscales2-demos". This directory appears then in the files list on the left hand side of the window. Double click it to enter the freshly cloned directory with tutorial notebooks.
51 To see an overview, open the "tutorial.ipynb"
52 [[image:1752050031198-600.png]]
53 Run the notebooks of your choice...
54 \\\\For **SpiNNaker** example notebooks use the command in the terminal window:
55 git clone [[https:~~/~~/github.com/SpiNNakerManchester/SpiNNakerJupyterExamples.git>>https://github.com/SpiNNakerManchester/SpiNNakerJupyterExamples.git]]
56 This creates the SpiNNakerJupyterExamples directory.
57 First run the "Setup" notebook in the directory (choose the "EBRAINS-...." kernel, when asked), select "Run" > "Run all cells" 
58 Then your environment is prepared to run the examples (e.g. the 01.RuningPyNNSimulations").
59 Note: As Kernel (right hand corner of the title line of the notebook), please use the "EBRAINS-...." kernel, not the default iPython Kernel. Some modules will not be found with the default kernel.