Wiki source code of openMINDS metadata for TVB-ready data
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7.1 | 5 | = An example script that creates openMINDS metadata for TVB data uploads = |
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1.1 | 6 | |
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7.1 | 7 | in JSON-LD format |
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1.1 | 8 | |
| 9 | = What can I find here? = | ||
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7.1 | 11 | * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph |
| 12 | * [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]] | ||
| 13 | * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph | ||
| 14 | * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data. | ||
| 15 | * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]] | ||
| 16 | * Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes. | ||
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7.1 | 18 | = Further information = |
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1.1 | 19 | |
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7.1 | 20 | * openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph |
| 21 | * ((( | ||
| 22 | This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing: | ||
| 23 | |||
| 24 | * Brain network simulation: | ||
| 25 | [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]] | ||
| 26 | * | ||
| 27 | |||
| 28 | Connectome construction: | ||
| 29 | [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]] | ||
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| 31 | * | ||
| 32 | |||
| 33 | Multiscale co-simulation with spiking networks: | ||
| 34 | [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]] | ||
| 35 | [[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]] | ||
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| 37 | * High-performance simulation: | ||
| 38 | [[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]] | ||
| 39 | |||
| 40 | * Bayesian Virtual Epileptic Patient: | ||
| 41 | [[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]] | ||
| 42 | * TVB Mouse Brains: | ||
| 43 | [[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]] | ||
| 44 | [[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]] | ||
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1.1 | 45 | ))) |
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7.1 | 47 | == Authors == |
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1.1 | 48 | |
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7.1 | 49 | * Roopa Pai |
| 50 | * Michael Schirner | ||
| 51 | * Lyuba Zehl | ||
| 52 | * Petra Ritter | ||
| 53 | |||
| 54 | == Contact == | ||
| 55 | |||
| 56 | Petra Ritter <petra.ritter@charite.de> | ||
| 57 | ))) | ||
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