Version 8.1 by michaels on 2020/12/08 12:11

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michaels 8.1 5 = Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
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8 = What can I find here? =
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michaels 7.1 10 * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
michaels 8.1 11 * [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
michaels 7.1 12 * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
13 * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
14 * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
15 * Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
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michaels 7.1 17 = Further information =
michaels 1.1 18
michaels 7.1 19 * openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
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21 This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
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23 * Brain network simulation:
24 [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
michaels 8.1 25 *
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27 Connectome construction:
28 [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
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michaels 8.1 30 *
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32 Multiscale co-simulation with spiking networks: 
33 [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
34 [[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
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36 * High-performance simulation: 
37 [[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
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39 * Bayesian Virtual Epileptic Patient:
40 [[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
41 * TVB Mouse Brains:
42 [[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
43 [[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
michaels 1.1 44 )))
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michaels 7.1 46 == Authors ==
michaels 1.1 47
michaels 7.1 48 * Roopa Pai
49 * Michael Schirner
50 * Lyuba Zehl
51 * Petra Ritter
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53 == Contact ==
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55 Petra Ritter <petra.ritter@charite.de>
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