Changes for page openMINDS

Last modified by lzehl on 2022/09/08 11:24
From version 42.1
edited by lzehl
on 2021/04/29 09:04
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To version 48.2
edited by lzehl
on 2021/07/07 20:18
Change comment: There is no comment for this version

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12 12  (((
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14 14  (((
15 -= What can I find here? =
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16 +This collab appeals to members of the neuroscience community that are interested in:
17 +(**1**) describing their research product in accordance with openMINDS
18 +(**2**) conceptually contributing to openMINDS
19 +(**3**) programmatically contributing to openMINDS
16 16  
21 += What you can find here: =
22 +
17 17  **+** general overview of openMINDS
18 18  **+** documentation for all openMINDS metadata models
19 19  **+** documentation for using openMINDS
20 20  **+** documentation for contributing to openMINDS
21 -**+** tutorials
27 +**+** tutorials (presentations & examples)
22 22  
23 -= Who has access? =
29 += Who is behind openMINDS? =
24 24  
25 25  (% style="text-align: justify;" %)
26 -This collab appeals to members of the neuroscience community that are interested in:
27 -(**1**) describing their research products, conform with openMINDS
28 -(**2**) contributing to openMINDS
32 +openMINDS is powered by [[**HBP**>>https://www.humanbrainproject.eu/en/||rel="noopener noreferrer" target="_blank"]] (**H**uman **B**rain **P**roject) and [[**EBRAINS**>>https://ebrains.eu/||rel="noopener noreferrer" target="_blank"]], but looking for external contributions throughout the neuroscience community.
29 29  
30 -= Who is openMINDS? =
31 -
32 32  (% style="text-align: justify;" %)
33 -openMINDS is powered by **HBP** ([[**H**uman **B**rain **P**roject>>https://www.humanbrainproject.eu/en/||rel="noopener noreferrer" target="_blank"]]) and **EBRAINS** ([[**E**uropean **B**rain **R**ese**A**rch **IN**fra**S**tructure>>https://ebrains.eu/||rel="noopener noreferrer" target="_blank"]]), but looking for external contributions throughout the neuroscience community.
35 +We, the openMINDS development team, currently unite knowledge from the EBRAINS Curation Service, the EBRAINS Knowledge Graph, the EBRAINS Atlas Service, and the INCF Knowledge Space teams. Here is our support email:
34 34  
35 -(% style="text-align: justify;" %)
36 -We, the openMINDS development team, currently unite knowledge from the EBRAINS curation, the EBRAINS Knowledge Graph, the EBRAINS Atlas, and the INCF Knowledge Space teams. If you want to get in touch with us, please contact us via our support email: [[openminds@ebrains.eu>>mailto:openminds@ebrains.eu]]
37 +(% style="text-align: center;" %)
38 +[[openminds@ebrains.eu>>mailto:openminds@ebrains.eu]]
37 37  
40 += Who adopted openMINDS? =
41 +
38 38  (% style="text-align: justify;" %)
39 -Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph and Interactive Brain Atlas. In addition, openMINDS is currently in the process of being adopted by the [[Japan Brain/MINDS project>>https://brainminds.jp/en/||rel="noopener noreferrer" target="_blank"]].
43 +Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph, the EBRAINS Atlas Service, and The Virtual Brain (TVB). In addition, openMINDS is currently in the process of being adopted by the [[Japan Brain/MINDS project>>https://brainminds.jp/en/||rel="noopener noreferrer" target="_blank"]].
44 +
45 +For integrating and maintaining community-wide accepted neuroscience ontologies, we are closely collaborating with the FAIR Data Informatics Lab (FDI Lab), formerly known as the Neuroscience Information Framework (NIF).
40 40  )))
41 41  
42 42  (% class="col-xs-12 col-sm-4" style="color:black;" %)
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43 43  (((
44 44  {{box title="**Jump to...**"}}
45 45  (% class="small" style="margin-top: 0.6em;" %)
46 -» [[Documentation>>doc:.openMINDS core.WebHome]]
47 - » [[Metadata models & schemas>>doc:.openMINDS core.Metadata models & schemas.WebHome]]
48 - » [[Application details>>doc:.openMINDS core.Application details.WebHome]]
49 - » [[Technical details>>doc:.openMINDS core.Implementation details.WebHome]]
50 -» [[How to contribute>>doc:.openMINDS SANDS.WebHome]]
51 - » [[Code of conduct>>doc:.openMINDS SANDS.Code Of Conduct.WebHome]]
52 - » [[How to report & ask questions>>doc:.openMINDS SANDS.Report & ask questions.WebHome]]
52 +» [[Documentation>>doc:.Documentation.WebHome]]
53 + » [[Metadata models & schemas>>doc:.Documentation.Metadata models and schemas.WebHome]]
54 + » [[Application details>>doc:.Documentation.Application details.WebHome]]
55 + » [[Technical details>>doc:.Documentation.Implementation details.WebHome]]
56 +» [[How to contribute>>doc:.How to contribute.WebHome]]
57 + » [[Code of conduct>>doc:.How to contribute.Code Of Conduct.WebHome]]
58 + » [[Report & ask questions>>doc:.How to contribute.Report & ask questions.WebHome]]
59 + » [[Direct contributions>>doc:.How to contribute.Direct contributions.WebHome]]
53 53  » [[Tutorials>>doc:.Tutorials.WebHome]]
54 54   » Presentations
55 55   » Examples
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58 58  
59 59  {{box title="**Supported research products**"}}
60 60  (% class="small" style="margin-top: 0.6em;" %)
61 -[[Dataset>>||anchor="Dataset"]]
62 -[[MetaDataModel>>||anchor="MetaDataModel"]]
63 -[[Model>>||anchor="Model"]]
64 -[[Software>>||anchor="Software"]]
68 +Dataset[[^^ 1^^>>||anchor="Dataset"]]
69 +MetaDataModel[[^^ 2^^>>||anchor="MetaDataModel"]]
70 +Model[[^^ 3^^>>||anchor="Model"]]
71 +Software[[ ^^4^^>>||anchor="Software"]]
65 65  {{/box}}
66 66  
67 67  {{box title="**List of GitHub projects**"}}
68 68  (% class="small" style="margin-top: 0.6em;" %)
69 -[[openMINDS (main)>>https://github.com/HumanBrainProject/openMINDS]]
76 +[[openMINDS (central)>>https://github.com/HumanBrainProject/openMINDS]]
77 +[[openMINDS generator>>https://github.com/HumanBrainProject/openMINDS_generator]]
70 70  [[openMINDS core>>https://github.com/HumanBrainProject/openMINDS_core]]
71 71  [[openMINDS SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
72 72  [[openMINDS controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
73 -[[openMINDS instances>>https://github.com/HumanBrainProject/openMINDS_instances]]
74 -[[openMINDS generator>>https://github.com/HumanBrainProject/openMINDS_generator]]
81 +[[openMINDS computation>>https://github.com/HumanBrainProject/openMINDS_computation]]
82 +[[openMINDS ephys>>https://github.com/HumanBrainProject/openMINDS_ephys]]
75 75  {{/box}}
76 76  )))
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83 83  The metadata model specification and corresponding open source code was developed in part or in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreements No. 720270, No. 785907, and No. 945539 (Human Brain Project SGA1, SGA2, and SGA3).
84 84  {{/box}}
85 85  
94 +----
95 +
96 +====== Footnotes ======
97 +
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87 87  (((
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89 -{{id name="Dataset"/}}**Dataset**: Within openMINDS a "Dataset" describes experimental data originating from human, animal or simulation studies.
90 -{{id name="MetaDataModel"/}}**MetaDataModel**: Within openMINDS a "MetaDataModel" describes specifications for structuring metadata and/or file repositories.
91 -{{id name="Model"/}}**Model**: Within openMINDS a "Model" describes code and data defined around a computational model.
92 -{{id name="Software"/}}**Software**: Within openMINDS a "Software" describes programs and other operating information used by a computer to handle data across different Datasets or Models.
101 +{{id name="Dataset"/}}**1) Dataset**: Within openMINDS a "Dataset" describes experimental data originating from human, animal or simulation studies.
102 +{{id name="MetaDataModel"/}}**2) MetaDataModel**: Within openMINDS a "MetaDataModel" describes specifications for structuring metadata and/or file repositories.
103 +{{id name="Model"/}}**3) Model**: Within openMINDS a "Model" describes code and data defined around a computational model.
104 +{{id name="Software"/}}**4) Software**: Within openMINDS a "Software" describes programs and other operating information used by a computer to handle data across different Datasets or Models.
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Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 +The open Metadata Initiative for Neuroscience Data Structures (openMINDS) is the umbrella project for community-driven, integrated metadata models for neuroscience graph databases. The openMINDS Collab provides a general overview of all openMINDS metadata models, their schemas and respective integration pipelines and APIs. It also provides documentation on how to contribute to and how to use openMINDS (including hands-on tutorials).
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openMINDS