Wiki source code of openMINDS

Version 47.1 by lzehl on 2021/07/07 15:10
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5 [[image:openMINDS_logo_github.png||alt="openMINDS logo" height="170px" style="margin-right:1em"]]
6 The **o**pen **M**etadata **I**nitiative for **N**euroscience **D**ata **S**tructures:
7 Community-driven metadata models for neuroscience graph databases.
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15 = What can I find here? =
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17 **+** general overview of openMINDS
18 **+** documentation for all openMINDS metadata models
19 **+** documentation for using openMINDS
20 **+** documentation for contributing to openMINDS
21 **+** tutorials
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23 = Who has access? =
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26 This collab appeals to members of the neuroscience community that are interested in:
27 (**1**) describing their research product in accordance with openMINDS
28 (**2**) conceptually contributing to openMINDS
29 (**3**) programmatically contributing to openMINDS
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31 = Who is openMINDS? =
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34 openMINDS is powered by [[**HBP**>>https://www.humanbrainproject.eu/en/||rel="noopener noreferrer" target="_blank"]] (**H**uman **B**rain **P**roject) and [[**EBRAINS**>>https://ebrains.eu/||rel="noopener noreferrer" target="_blank"]], but looking for external contributions throughout the neuroscience community.
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37 We, the openMINDS development team, currently unite knowledge from the EBRAINS Curation Service, the EBRAINS Knowledge Graph, the EBRAINS Atlas Service, and the INCF Knowledge Space teams. If you want to get in touch with us, please contact us via our support email: [[openminds@ebrains.eu>>mailto:openminds@ebrains.eu]]
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40 Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph and Interactive Brain Atlas. In addition, openMINDS is currently in the process of being adopted by the [[Japan Brain/MINDS project>>https://brainminds.jp/en/||rel="noopener noreferrer" target="_blank"]].
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45 {{box title="**Jump to...**"}}
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47 » [[Documentation>>doc:.Documentation.WebHome]]
48 » [[Metadata models & schemas>>doc:.Documentation.Metadata models and schemas.WebHome]]
49 » [[Application details>>doc:.Documentation.Application details.WebHome]]
50 » [[Technical details>>doc:.Documentation.Implementation details.WebHome]]
51 » [[How to contribute>>doc:.How to contribute.WebHome]]
52 » [[Code of conduct>>doc:.How to contribute.Code Of Conduct.WebHome]]
53 » [[Report & ask questions>>doc:.How to contribute.Report & ask questions.WebHome]]
54 » [[Direct contributions>>doc:.How to contribute.Direct contributions.WebHome]]
55 » [[Tutorials>>doc:.Tutorials.WebHome]]
56 » Presentations
57 » Examples
58 » [[FAQs>>doc:.FAQs.WebHome]]
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63 Dataset[[^^ 1^^>>||anchor="Dataset"]]
64 MetaDataModel[[^^ 2^^>>||anchor="MetaDataModel"]]
65 Model[[^^ 3^^>>||anchor="Model"]]
66 Software[[ ^^4^^>>||anchor="Software"]]
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69 {{box title="**List of GitHub projects**"}}
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71 [[openMINDS (central)>>https://github.com/HumanBrainProject/openMINDS]]
72 [[openMINDS generator>>https://github.com/HumanBrainProject/openMINDS_generator]]
73 [[openMINDS core>>https://github.com/HumanBrainProject/openMINDS_core]]
74 [[openMINDS SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
75 [[openMINDS controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
76 [[openMINDS computation>>https://github.com/HumanBrainProject/openMINDS_computation]]
77 [[openMINDS ephys>>https://github.com/HumanBrainProject/openMINDS_ephys]]
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86 The metadata model specification and corresponding open source code was developed in part or in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreements No. 720270, No. 785907, and No. 945539 (Human Brain Project SGA1, SGA2, and SGA3).
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89 ----
90
91 ====== Footnotes ======
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96 {{id name="Dataset"/}}**1) Dataset**: Within openMINDS a "Dataset" describes experimental data originating from human, animal or simulation studies.
97 {{id name="MetaDataModel"/}}**2) MetaDataModel**: Within openMINDS a "MetaDataModel" describes specifications for structuring metadata and/or file repositories.
98 {{id name="Model"/}}**3) Model**: Within openMINDS a "Model" describes code and data defined around a computational model.
99 {{id name="Software"/}}**4) Software**: Within openMINDS a "Software" describes programs and other operating information used by a computer to handle data across different Datasets or Models.
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Public

openMINDS