Wiki source code of openMINDS

Last modified by lzehl on 2022/09/08 11:24
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lzehl 23.1 5 [[image:openMINDS_logo_github.png||alt="openMINDS logo" height="170px" style="margin-right:1em"]]
oschmid 15.1 6 The **o**pen **M**etadata **I**nitiative for **N**euroscience **D**ata **S**tructures:
lzehl 62.1 7 A community-driven metadata framework for neuroscience graph databases.
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16 This collab appeals to members of the neuroscience community that are interested in:
17 (**1**) describing their research product in accordance with openMINDS
18 (**2**) conceptually contributing to openMINDS
19 (**3**) programmatically contributing to openMINDS
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lzehl 48.1 21 = What you can find here: =
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lzehl 21.1 23 **+** general overview of openMINDS
lzehl 52.1 24 **+** documentation & HTML views for all openMINDS metadata models
lzehl 53.1 25 **+** documentation for contributing to openMINDS 
26 **+** documentation for using openMINDS (incl. tutorials)
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lzehl 48.1 28 = Who is behind openMINDS? =
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lzehl 46.2 31 openMINDS is powered by [[**HBP**>>https://www.humanbrainproject.eu/en/||rel="noopener noreferrer" target="_blank"]] (**H**uman **B**rain **P**roject) and [[**EBRAINS**>>https://ebrains.eu/||rel="noopener noreferrer" target="_blank"]], but looking for external contributions throughout the neuroscience community.
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lzehl 66.1 34 We, the openMINDS development team, currently unite knowledge from the EBRAINS Curation Service, the EBRAINS Knowledge Graph, the EBRAINS Atlas Service, and the INCF Knowledge Space teams.
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37 This is our support email:** [[openminds@ebrains.eu>>mailto:openminds@ebrains.eu]]**
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lzehl 48.1 39 = Who adopted openMINDS? =
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lzehl 48.2 42 Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph, the EBRAINS Atlas Service, and The Virtual Brain (TVB). In addition, openMINDS is currently in the process of being adopted by the [[Japan Brain/MINDS project>>https://brainminds.jp/en/||rel="noopener noreferrer" target="_blank"]].
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lzehl 51.1 44 For integrating and maintaining community-wide accepted neuroscience ontologies, we are closely collaborating with the InterLex project, a core component of the SciCrunch infrastructure of the FAIR Data Informatics Lab (FDI Lab), formerly known as the Neuroscience Information Framework (NIF).
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49 {{box title="**Jump to...**"}}
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lzehl 45.1 51 » [[Documentation>>doc:.Documentation.WebHome]]
52 » [[Metadata models & schemas>>doc:.Documentation.Metadata models and schemas.WebHome]]
53 » [[Application details>>doc:.Documentation.Application details.WebHome]]
54 » [[Technical details>>doc:.Documentation.Implementation details.WebHome]]
55 » [[How to contribute>>doc:.How to contribute.WebHome]]
56 » [[Code of conduct>>doc:.How to contribute.Code Of Conduct.WebHome]]
57 » [[Report & ask questions>>doc:.How to contribute.Report & ask questions.WebHome]]
58 » [[Direct contributions>>doc:.How to contribute.Direct contributions.WebHome]]
lzehl 34.2 59 » [[Tutorials>>doc:.Tutorials.WebHome]]
lzehl 59.1 60 » [[Presentations>>doc:.Tutorials.Presentations.WebHome||target="_blank"]]
lzehl 34.2 61 » Examples
62 » [[FAQs>>doc:.FAQs.WebHome]]
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lzehl 46.4 67 Dataset[[^^ 1^^>>||anchor="Dataset"]]
lzehl 48.1 68 MetaDataModel[[^^ 2^^>>||anchor="MetaDataModel"]]
69 Model[[^^ 3^^>>||anchor="Model"]]
lzehl 46.4 70 Software[[ ^^4^^>>||anchor="Software"]]
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lzehl 64.1 75 [[openMINDS (main)>>https://github.com/HumanBrainProject/openMINDS]]
lzehl 46.1 76 [[openMINDS generator>>https://github.com/HumanBrainProject/openMINDS_generator]]
lzehl 10.1 77 [[openMINDS core>>https://github.com/HumanBrainProject/openMINDS_core]]
78 [[openMINDS SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
79 [[openMINDS controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
lzehl 46.1 80 [[openMINDS computation>>https://github.com/HumanBrainProject/openMINDS_computation]]
lzehl 63.1 81 [[openMINDS publications>>https://github.com/HumanBrainProject/openMINDS_publications]]
82 [[openMINDS chemicals>>https://github.com/HumanBrainProject/openMINDS_chemicals]]
lzehl 46.1 83 [[openMINDS ephys>>https://github.com/HumanBrainProject/openMINDS_ephys]]
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lzehl 42.1 92 The metadata model specification and corresponding open source code was developed in part or in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreements No. 720270, No. 785907, and No. 945539 (Human Brain Project SGA1, SGA2, and SGA3).
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lzehl 46.4 95 ----
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97 ====== Footnotes ======
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lzehl 46.4 102 {{id name="Dataset"/}}**1) Dataset**: Within openMINDS a "Dataset" describes experimental data originating from human, animal or simulation studies.
103 {{id name="MetaDataModel"/}}**2) MetaDataModel**: Within openMINDS a "MetaDataModel" describes specifications for structuring metadata and/or file repositories.
104 {{id name="Model"/}}**3) Model**: Within openMINDS a "Model" describes code and data defined around a computational model.
105 {{id name="Software"/}}**4) Software**: Within openMINDS a "Software" describes programs and other operating information used by a computer to handle data across different Datasets or Models.
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Public

openMINDS