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... ... @@ -1,9 +1,28 @@ 1 -The **open** **M**etadata **I**nitiative for **N**euroscience **D**ata **S**tructures, short **openMINDS**, develops and maintains a set of metadata models for research products in the field of neuroscience. As research products, openMINDS considers data originating from human/animal studies or simulations (Dataset), computational models (Model), software tools (Software), as well as metadata/data models (MetaDataModel). 1 +(% class="box infomessage" %) 2 +((( 3 +(% style="text-align: justify;" %) 4 +This documentation covers different aspects of openMINDS on different level of detail, in order to consider the different expectations and needs of each user. 2 2 3 -Currently, openMINDS has integrated the following metadata models: 6 +(% style="text-align: justify;" %) 7 +Please find below a summary of the content of this documentation that might help you to find what you need. 8 +))) 4 4 5 -* [[**openMINDS_core**>>url:https://github.com/HumanBrainProject/openMINDS_core]] metadata model contains schemas that can be used to describe the general origin, location and content of research products. The openMINDS_core schemas cover the basic integration of research products into the EBRAINS Knowledge Graph. 6 -* [[**openMINDS_SANDS**>>url:https://github.com/HumanBrainProject/openMINDS_SANDS]] metadata model contains schemas that can be used to identify and describe brain atlases, as well as describe the anatomical anchoring or registration of datasets to these brain atlases. The openMINDS_SANDS schemas cover the spatial integration of research products (in particular datasets) into the EBRAINS Atlases. 7 -* [[**openMINDS_controlledTerms**>>url:https://github.com/HumanBrainProject/openMINDS_controlledTerms]] is a collection of schemas and corresponding metadata (as JSON-LDs) for different specialized terminologies. Schemas of openMINDS_core as well as openMINDS_SANDS reference to these controlled terms. The provided metadata (JSON-LDs) for the different specialized terminologies link (where applicable) to a matching ontology term. 10 +=== Application details === 8 8 9 -The openMINDS project is powered by [[HBP>>url:https://www.humanbrainproject.eu]] (Human Brain Project) and [[EBRAINS>>url:https://ebrains.eu/]] (European Brain ReseArch INfraStructure) and maintained by a small development team. Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph and Atlases. 12 +The documentation of the application details comprises a general description of a typical JSON-LD as used in the EBRAINS Knowledge Graph and the different approaches in place for writing a metadata description for your research product in form of an openMINDS conform JSON-LD metadata collection. 13 + 14 +For more details please go to: [[Application details>>doc:.Application details.WebHome]] 15 + 16 +=== Metadata models & schemas === 17 + 18 +The documentation of the metadata models & schemas provides a short overview for each openMINDS metadata model, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas. 19 + 20 +For more details please go to: [[Metadata models & schemas>>doc:.Metadata models & schemas.WebHome]] 21 + 22 +=== Technical details === 23 + 24 +The documentation of the technical details explains the layout and requirements needed to keep the openMINDS modularity, the openMINDS integration pipeline, as well as the syntax of the openMINDS schema template. 25 + 26 +For more details please go to: [[Technical details>>doc:.Implementation details.WebHome]] 27 + 28 +