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Last modified by lzehl on 2021/07/05 18:57
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... ... @@ -111,38 +111,34 @@ 111 111 === The openMINDS schema template syntax === 112 112 113 113 (% style="text-align: justify;" %) 114 -All openMINDS metadata models us ea light-weighted schema template syntaxfor defining theexpectedmetadata. The correspondinglyformattedschemafiles use the extension: **##.schema.tpl.json##**.114 +All openMINDS metadata models are defined using a light-weighted schema template syntax. Although this schema template syntax is inspired by JSON-Schema, it outsources most schema technicalities to be handled in the openMINDS integration pipeline, making the openMINDS schemas more human-readable, especially for untrained eyes. The few remaining customized technical properties which need additional interpretation are prefixed in the syntax with **##"_"##**. Within the openMINDS integration pipeline (cf. below), the schema template syntax is interpreted, extended and flexibly translated to various formal metadata formats (e.g., JSON-Schema). The specifications of the openMINDS schema template syntax are described in following. 115 115 116 116 (% style="text-align: justify;" %) 117 -Al though, as the fileextension suggests, this openMINDS schematemplatesyntaxis inspiredbyJSON-Schema,itfacilitatesoreven excludestechnical aspects making theopenMINDSschemasmorehuman-readable,especiallyfor untrained eyes.Behindthescenes, within the openMINDSintegration pipeline(cf.below), this schematemplate syntaxistheninterpretedandflexiblytranslatedto various formalmetadata formats (e.g., JSON-Schema).117 +All openMINDS schemas need to have the extension **##.schema.tpl.json##** and each schema is defined as a nested associative array (dictionary) with the following conceptual structure: 118 118 119 -(% style="text-align: justify;" %) 120 -Despite the simplification in comparison to JSON-Schema, the openMINDS schema templates are also, at the core, specially formatted JSON files using a particular syntax, meaning special key-value pairs that define the validation rules of a schema. Please find in the following a full documentation of the openMINDS schema template syntax and how it's key-value pairs need to be defined and interpreted. 121 - 122 -(% style="text-align: justify;" %) 123 -Let's start by going through the syntax of a simple openMINDS schema, the contactInformation.schema.tpl.json: 124 - 125 125 {{code language="json"}} 126 126 { 127 - "_type": "https://openminds.ebrains.eu/core/ContactInformation", 128 - "required": [ 129 - "email" 130 - ], 121 + "_type": "https://openminds.ebrains.eu/LABEL_OF_METADATA_MODEL/SCHEMA_NAME", 131 131 "properties": { 132 - "email": { 133 - "type": "string", 134 - "_formats": [ 135 - "email" 136 - ], 137 - "_instruction": "Enter the email address of this person." 138 - } 139 - } 123 + "PROPERTY_NAME": { 124 + "type": "DATA_TYPE", 125 + "_instruction": "METADATA_ENTRY_INSTRUCTION" 126 + }, 127 + "required": [ 128 + "PROPERTY_NAME" 129 + ] 140 140 } 141 141 {{/code}} 142 142 143 143 (% style="text-align: justify;" %) 144 - The**##"_type"##**identifies the schema type or namespacefortheparticular schema.In **##"required"##** all property names have to be listed{{footnote}}A list isadata structure thatis anordered sequenceof elements. Eachelementnsideof a list is typically called anitem. Lists aredefined byhaving valuesbetween squarebrackets**##[ ]##**.{{/footnote}}that must beprovided and filled outn avalid instance of this schema type(here, onlytheproperty**##"email"##**is required).Under**##"properties"##**,informationabout the expectedvalue for each property defining theparticularschemais giveninanesteddictionary {{footnote}}A dictionary isadata structure that consists of an unordered collection of key:valuepairs. Dictionaries are defined by having these key:value pairsbetweencurly brackets **##{...}##**.{{/footnote}}(here, the only property is**##"email"##**). In thisnested dictionary, the **##"type"##**of the expected valueshouldbe specified(here,thevaluehas to beof type **##"string"##** {{footnote}}Strings aredefinedas charactersbetweenquotes **##"..."##**.{{/footnote}}). For values of type **##"string"##** it isfurther possibleto list theacceptedformatsof the **##"string"##** under**##"_formats"##** (here,the expected **##"string"##** valuehas tobe formattedas **##"email"##** address {{footnote}}An email address, suchasopenminds@ebrains.eu, is made up from a local-part,the symbol **##@##**, and a domain, whichmay bea domainname or an IP address enclosed in brackets{{/footnote}}.134 +**##"_type"##** defines the schema type (or namespace) with the depicted naming convention, where the label of the respective openMINDS metadata model (e.g., **##"core"##**) and the schema name (format: UpperCamelCase; e.g. **##"Person"##**) have to be specified. The schema name should be meaningful and provide some insides into what metadata content the schema covers. 145 145 136 +(% style="text-align: justify;" %) 137 +Under **##"properties"##** a nested associated array is defined, where each key defines the property name (format: lowerCamelCase; e.g. **##"givenName"##**) and the associated value is again a nested associated array defining the expected data **##"type"##** and the **##"_instructions"##** for entering the correct metadata for the respective property. Currently the openMINDS schema template syntax supports the following data types: **##"string, **##"integer"##**, **##"float"##**, **##"boolean"##**, **##"array"##** and **##"object"##**. Depending on the expected data type additional constraints can be made for the metadata entry of a respective property (cf. below). 138 + 139 +(% style="text-align: justify;" %) 140 +Under **##"required"##** a list of property names can be provided that are obligatory to be present in a correctly instantiated metadata instance of the respective schema. If none of the properties are required, this key-value pair does not have to be specified. 141 + 146 146 === The openMINDS integration pipeline === 147 147 148 148 (//**coming soon**//) If you'd like to learn more about the openMINDS integration pipeline, especially if you'd like to contribute to it, please get in touch with us (the openMINDS development team) via the issues on the openMINDS or openMINDS_generator GitHub or the support email: openminds@ebrains.eu