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Last modified by lzehl on 2021/07/05 18:57
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... ... @@ -111,30 +111,40 @@ 111 111 === The openMINDS schema template syntax === 112 112 113 113 (% style="text-align: justify;" %) 114 -All openMINDS metadata models us ea light-weighted schema template syntaxfor defining the expectedmetadata.Thecorrespondinglyformattedschemafilesuse the extension: **##.schema.tpl.json##**.114 +All openMINDS metadata models are defined using a light-weighted schema template syntax. Although this schema template syntax is inspired by JSON-Schema, it outsources most schema technicalities to be handled in the openMINDS integration pipeline, making the openMINDS schemas more human-readable, especially for untrained eyes. 115 115 116 116 (% style="text-align: justify;" %) 117 - Although, as the file extensionsuggests, thisopenMINDSschematemplatesyntaxis inspiredby JSON-Schema,itfacilitatesorevenexcludesechnicalaspectsmakingtheopenMINDSschemasmorehuman-readable, especially foruntrainedeyes.Behindthescenes,within the openMINDS integration pipeline (cf. below), thisschema template syntax istheninterpreted and flexibly translated to various formalmetadata formats(e.g.,JSON-Schema).117 +The few remaining customized technical properties which need additional interpretation or translation to a formal schema languages (e.g. JSON-Schema) have an underscore as prefix (e.g., **##"_type"##**). Within the openMINDS integration pipeline (cf. below), the schema template syntax is interpreted, extended and flexibly translated to various formal schema languages. All further specifications of the openMINDS schema template syntax are described below. 118 118 119 119 (% style="text-align: justify;" %) 120 - DespitethesimplificationincomparisontoJSON-Schema,theopenMINDSschemaemplatesare also,attheore,specially formattedJSON filesusingaparticularsyntax, meaningspecial key-valuepairs thatdefinethe validationulesof a schema.Please find inthe followinga full documentationof the openMINDS schema template syntax and how it's key-valuepairsneedto be defined and interpreted.120 +All openMINDS schemas need to have the extension **##.schema.tpl.json##** and each schema is defined as a nested associative array (dictionary) with the following conceptual structure: 121 121 122 +{{code language="json"}} 123 +{ 124 + "_type": "https://openminds.ebrains.eu/LABEL_OF_METADATA_MODEL/SCHEMA_NAME", 125 + "properties": { 126 + "PROPERTY_NAME": { 127 + "type": "DATA_TYPE", 128 + "_instruction": "METADATA_ENTRY_INSTRUCTION" 129 + }, 130 + "required": [ 131 + "PROPERTY_NAME" 132 + ] 133 +} 134 +{{/code}} 135 + 122 122 (% style="text-align: justify;" %) 123 - Forthemorexperiencedprogrammers, let'sstartbyexplainingfirst some generaltermsthatwillbeaterused inthe openMINDSschemaemplatesyntaxspecification.Moreexperiencedprogrammerscanofcourse skip these explanationsandjump directlyfurtherdown.137 +**##"_type"##** defines the schema type (or namespace) with the depicted naming convention, where the label of the respective openMINDS metadata model (e.g., **##"core"##**) and the schema name (format: UpperCamelCase; e.g. **##"Person"##**) have to be specified. Obviously, the schema name should be meaningful and provide some insides into what metadata content the schema covers. 124 124 125 -**What are strings, integers, floats or booleans?** Generally speaking strings, integers, floats or booleans are derived **data types**. A **string** is defined as a sequence of characters between quotes (e.g., ##"Is this a string? YES!"## or ##'thisIsAlsoAString'##). For a string, openMINDS accepts Unicode characters. An **integer** is a whole number, positive or negative, without decimals, of unlimited length (e.g., ##5##, ##-5## or ##1238921234##). A **float** represents a real number, written with a decimal point dividing the integer and fractional part, both of unlimited length (e.g., ##5.15##, ##-5.15## or ##1238921234.1345##). A **boolean** represents a logical proposition by means of the binary digits ##0## (##false##) and ##1## (##true##), especially in computing and electronics. How a boolean is written depends highly on the format or computational language. 139 +(% style="text-align: justify;" %) 140 +Under **##"properties"##** a nested associative array is defined, where each key defines the property name (format: lowerCamelCase; e.g. **##"givenName"##**). The corresponding value is again a nested associative array defining the expected data **##"type"##** (cf. below) and the **##"_instructions"##** for entering the correct metadata for the respective property. 126 126 127 -**What is a list or array?** A **list** is a data structure that is a mutable ordered sequence of values (also called items). The values of a list are typically defined between square brackets (e.g., ##[value1, value2, value3]##). Note that the values within a list do not have to have the same data type. In contrast, an **array** is a data structure that is a mutable unordered sequence of values of the same data type. What data types are accepted for values in a list or in an array is highly depending on the format or computational language. 142 +(% style="text-align: justify;" %) 143 +Under **##"required"##** a list of property names can be provided that are obligatory to be present in a correctly instantiated metadata instance of the respective schema. If none of the properties are required, this key-value pair does not have to be specified. 128 128 129 -**What is a key-value pair or an associative array?** A **key-value pair** (sometimes also called name-value pair, attribute-value pair, property-value pair, or field-value pair) is a basic data representation and standard language feature in computing languages, systems and applications. In most cases this concept is used to build an **associative array**, meaning an unordered list of unique keys with associated values typically defined within curly brackets (e.g., ##{key1: value1, key3: value3, key2:value2}##). What data types are accepted for keys and values highly depends on the format or computational language. Note that a value could also be a data structure, such as a list, an array or an associative array. 145 +(% style="text-align: justify;" %) 146 +Now, depending on the expected data type additional constraints can be made for the metadata entry of a respective property. Currently, the openMINDS schema template syntax supports the following data types: **##"string"##**, ##**"integer"##**, **##"float"##**, **##"boolean"##**, **##"array"##** and **##"object"##**. 130 130 131 -**What is a dictionary and what is JSON?** 132 - 133 - 134 -==== Specification of the openMINDS schema template syntax ==== 135 - 136 -(coming soon) 137 - 138 138 === The openMINDS integration pipeline === 139 139 140 140 (//**coming soon**//) If you'd like to learn more about the openMINDS integration pipeline, especially if you'd like to contribute to it, please get in touch with us (the openMINDS development team) via the issues on the openMINDS or openMINDS_generator GitHub or the support email: openminds@ebrains.eu