Last modified by lzehl on 2021/07/02 17:06
From version 11.1
edited by lzehl
on 2021/02/22 15:22
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To version 48.1
edited by lzehl
on 2021/03/17 16:13
Change comment: There is no comment for this version

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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
7 +A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and to available metadata instances for selected schemas.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that you can use to describe the general origin, resource location, and content of your research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 -{{container layoutStyle="columns"}}
18 -(((
19 -(% class="small" %)
20 -**ACTORS**
21 -Affiliation
22 -ContactInformation
23 -Contribution
24 -Organization
25 -Person
26 -(% class="small" %)
27 -**DATA**
28 -ContentType
29 -Copyright
30 -FileBundle
31 -FileInstance
32 -FileRepository
33 -Hash
34 -License
35 -)))
36 -(((
37 -(% class="small" %)
38 -**MISCELLANEOUS**
39 -DigitalIdentifier
40 -DigitalIdentifierSchema
41 -Funding
42 -QuantitativeValue
43 -QuantitativeValueRange
44 -(% class="small" %)
45 -**PRODUCTS**
46 -Dataset
47 -DatasetVersion
48 -MetaDataModel
49 -MetaDataModelVersion
50 -Model
51 -ModelVersion
52 -Project
53 -Software
54 -SoftwareVersion
55 -)))
56 -(((
57 -(% class="small" %)
58 -**RESEARCH**
59 -ParameterSetting
60 -Protocol
61 -ProtocolExecution
62 -Subject
63 -SubjectGroup
64 -SubjectGroupState
65 -SubjectState
66 -TissueSample
67 -TissueSampleCollection
68 -TissueSampleCollectionState
69 -TissueSampleState
70 -)))
71 -{{/container}}
18 +(% style="text-align: right;" %)
19 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 +{{html}}<iframe id="coreFrame" src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>{{/html}}
72 72  
22 +(% class="wikigeneratedid" style="text-align: justify;" %)
23 +In case of EBRAINS, metadata representations (instances) of a few selected schemas (**##ContentType##**, **##DititalIdentifierSchema##**, **##License##**) are centrally defined and maintained in a library on a separate [[openMINDS instances GitHub>>https://github.com/HumanBrainProject/openMINDS_instances/||rel="noopener noreferrer" target="_blank"]] to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
24 +
25 +(% class="wikigeneratedid" style="text-align: justify;" %)
26 +For details on, contributing to, or reviewing examples of the openMINDS core metadata model please checkout the dedicated GitHub repository:
27 +
28 +(% class="wikigeneratedid" %)
29 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
30 +
73 73  === openMINDS SANDS ===
74 74  
75 -The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
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34 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that you can use to capture the anatomical location of your neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
76 76  
77 -{{container layoutStyle="columns"}}
78 -(((
79 -(% class="small" %)
80 -AnatomicalEntity
81 -AnatomicalEntityRelation
82 -Annotation
83 -AtlasTerminology
84 -)))
85 -(((
86 -(% class="small" %)
87 -BrainAtlas
88 -BrainAtlasVersion
89 -CoordinatePoint
90 -CoordinateSpace
91 -)))
92 -(((
93 -(% class="small" %)
94 -Electrode
95 -ElectrodeArray
96 -ElectrodeContact
97 -Image
98 -)))
99 -{{/container}}
36 +(% style="text-align: right;" %)
37 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
38 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
100 100  
40 +(% class="wikigeneratedid" style="text-align: justify;" %)
41 +For details on, contributing to, or reviewing examples of the openMINDS SANDS metadata model please checkout the dedicated GitHub repository:
42 +
43 +(% class="wikigeneratedid" %)
44 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
45 +
101 101  === openMINDS controlledTerms ===
102 102  
103 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable.
48 +(% style="text-align: justify;" %)
49 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
104 104  
105 -=== openMINDS instances ===
51 +(% style="text-align: right;" %)
52 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
53 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/controlledTerms.html" width="100%" style="border:0; height: 25em"/>{{/html}}
106 106  
107 -xxx
55 +(% class="wikigeneratedid" style="text-align: justify;" %)
56 +Except for **##TermSuggestion##**, the openMINDS controlledTerms metadata schemas differ only in their schema type which defines the terminology to which correspondingly created metadata representations (instances) belong to. In order to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph, instances for all controlled terms are centrally defined and maintained in a library on the openMINDS controlledTerms GitHub under [[**##terminologies/##**>>https://github.com/HumanBrainProject/openMINDS_controlledTerms/tree/v1/terminologies]]. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
57 +
58 +(% style="text-align: justify;" %)
59 +We expect the list of controlled terms (schema as well as instances) to grow based on your feedback. You can provide this feedback directly through the schema **##TermSuggestion##**. If an important term is missing from our controlled library, this schema provides you with the possibility to define your own term and register it as a suggestion for the controlled library. For this purpose, the **##TermSuggestion##** schema has two more properties (~*~*~#~#"addExistingTerminology"~#~#~*~*, ~*~*~#~#"suggestNewTerminology"~#~#~*~*) where you can state to which terminology the new suggested (not yet controlled) term should belong to. Within the EBRAINS Knowledge Graph, the metadata representations for **##TermSuggestion##** will be regularly reviewed by the openMINDS development team in order to integrate these community-driven suggestions into the controlledTerms terminologies and corresponding ontologies (where applicable).
60 +
61 +(% class="wikigeneratedid" style="text-align: justify;" %)
62 +For details on, contributing to, or reviewing examples of the openMINDS controlledTerms metadata model please checkout the dedicated GitHub repository:
63 +
64 +(% class="wikigeneratedid" %)
65 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
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