Last modified by lzehl on 2021/07/02 17:06
From version 13.1
edited by lzehl
on 2021/02/22 16:03
Change comment: There is no comment for this version
To version 32.1
edited by lzehl
on 2021/02/24 11:31
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -4,7 +4,7 @@
4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
7 +A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
... ... @@ -15,96 +15,62 @@
15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 -{{container layoutStyle="columns"}}
19 -(((
20 -(% class="small" %)
21 -**ACTORS**
22 -Affiliation
23 -ContactInformation
24 -Contribution
25 -Organization
26 -Person
27 -(% class="small" %)
28 -**DATA**
29 -ContentType
30 -Copyright
31 -FileBundle
32 -FileInstance
33 -FileRepository
34 -Hash
35 -License
36 -)))
37 -(((
38 -(% class="small" %)
39 -**MISCELLANEOUS**
40 -DigitalIdentifier
41 -DigitalIdentifierSchema
42 -Funding
43 -QuantitativeValue
44 -QuantitativeValueRange
45 -(% class="small" %)
46 -**PRODUCTS**
47 -Dataset
48 -DatasetVersion
49 -MetaDataModel
50 -MetaDataModelVersion
51 -Model
52 -ModelVersion
53 -Project
54 -Software
55 -SoftwareVersion
56 -)))
57 -(((
58 -(% class="small" %)
59 -**RESEARCH**
60 -ParameterSetting
61 -Protocol
62 -ProtocolExecution
63 -Subject
64 -SubjectGroup
65 -SubjectGroupState
66 -SubjectState
67 -TissueSample
68 -TissueSampleCollection
69 -TissueSampleCollectionState
70 -TissueSampleState
71 -)))
72 -{{/container}}
18 +(% style="text-align: right;" %)
19 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>{{/html}}
73 73  
22 +(% class="wikigeneratedid" style="text-align: justify;" %)
23 +In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
24 +
25 +(% class="wikigeneratedid" style="text-align: justify;" %)
26 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
27 +
28 +(% class="wikigeneratedid" %)
29 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
30 +
74 74  === openMINDS SANDS ===
75 75  
76 76  (% style="text-align: justify;" %)
77 77  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
78 78  
79 -{{container layoutStyle="columns"}}
80 -(((
81 -(% class="small" %)
82 -AnatomicalEntity
83 -AnatomicalEntityRelation
84 -Annotation
85 -AtlasTerminology
86 -)))
87 -(((
88 -(% class="small" %)
89 -BrainAtlas
90 -BrainAtlasVersion
91 -CoordinatePoint
92 -CoordinateSpace
93 -)))
94 -(((
95 -(% class="small" %)
96 -Electrode
97 -ElectrodeArray
98 -ElectrodeContact
99 -Image
100 -)))
101 -{{/container}}
36 +(% style="text-align: right;" %)
37 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
38 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
102 102  
40 +(% class="wikigeneratedid" style="text-align: justify;" %)
41 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
42 +
43 +(% class="wikigeneratedid" %)
44 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
45 +
103 103  === openMINDS controlledTerms - schemas ===
104 104  
105 105  (% style="text-align: justify;" %)
106 106  The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
107 107  
51 +(% style="text-align: right;" %)
52 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
53 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/controlledTerms.html" width="100%" style="border:0; height: 25em"/>{{/html}}
54 +
55 +(% style="text-align: justify;" %)
56 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
57 +
58 +(% style="text-align: justify;" %)
59 +Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
60 +
61 +(% class="wikigeneratedid" style="text-align: justify;" %)
62 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
63 +
64 +(% class="wikigeneratedid" %)
65 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
66 +
67 +=== openMINDS controlledTerms - terminologies ===
68 +
69 +The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
70 +
71 +(% style="text-align: right;" %)
72 +(% class="small" style="color:#7f8c8d" %)//**Coming soon:** //Click on a schema to discover its available instances.
73 +
108 108  {{container layoutStyle="columns"}}
109 109  (((
110 110  (% class="small" %)
... ... @@ -147,7 +147,6 @@
147 147  Species
148 148  Strain
149 149  Technique
150 -TermSuggestion
151 151  Terminology
152 152  TissueSampleType
153 153  TypeOfUncertainty
... ... @@ -155,9 +155,30 @@
155 155  )))
156 156  {{/container}}
157 157  
158 -(% style="text-align: justify;" %)
159 -Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
160 -
161 161  === openMINDS instances ===
162 162  
163 -xxx
125 +The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
126 +
127 +(% style="text-align: right;" %)
128 +(% class="small" style="color:#7f8c8d" %)//**Coming soon:**// Click on a schema to discover its available instances.
129 +
130 +{{container layoutStyle="columns"}}
131 +(((
132 +(% class="small" %)
133 +contentType
134 +)))
135 +(((
136 +(% class="small" %)
137 +License
138 +)))
139 +(((
140 +(% class="small" %)
141 +DigitalIdentifierSchema
142 +)))
143 +{{/container}}
144 +
145 +(% class="wikigeneratedid" style="text-align: justify;" %)
146 +For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository:
147 +
148 +(% class="wikigeneratedid" %)
149 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]]
Public

openMINDS