Last modified by lzehl on 2021/07/02 17:06
From version 14.1
edited by lzehl
on 2021/02/22 16:12
Change comment: There is no comment for this version
To version 6.1
edited by lzehl
on 2021/02/18 17:38
Change comment: There is no comment for this version

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12 12  
13 13  === openMINDS core ===
14 14  
15 -(% style="text-align: justify;" %)
16 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
15 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas:
17 17  
18 -{{container layoutStyle="columns"}}
19 -(((
20 -(% class="small" %)
21 -**ACTORS**
22 -Affiliation
23 -ContactInformation
24 -Contribution
25 -Organization
26 -Person
27 -(% class="small" %)
28 -**DATA**
29 -ContentType
30 -Copyright
31 -FileBundle
32 -FileInstance
33 -FileRepository
34 -Hash
35 -License
36 -)))
37 -(((
38 -(% class="small" %)
39 -**MISCELLANEOUS**
40 -DigitalIdentifier
41 -DigitalIdentifierSchema
42 -Funding
43 -QuantitativeValue
44 -QuantitativeValueRange
45 -(% class="small" %)
46 -**PRODUCTS**
47 -Dataset
48 -DatasetVersion
49 -MetaDataModel
50 -MetaDataModelVersion
51 -Model
52 -ModelVersion
53 -Project
54 -Software
55 -SoftwareVersion
56 -)))
57 -(((
58 -(% class="small" %)
59 -**RESEARCH**
60 -ParameterSetting
61 -Protocol
62 -ProtocolExecution
63 -Subject
64 -SubjectGroup
65 -SubjectGroupState
66 -SubjectState
67 -TissueSample
68 -TissueSampleCollection
69 -TissueSampleCollectionState
70 -TissueSampleState
71 -)))
72 -{{/container}}
17 +* Affiliation
18 +* ContactInformation
19 +* Contribution
20 +* Organization
21 +* Person
22 +* ContentType
23 +* Copyright
24 +* FileBundle
25 +* FileInstance
26 +* FileRepository
27 +* Hash
28 +* License
29 +* DigitalIdentifier
30 +* DigitalIdentifierSchema
31 +* Funding
32 +* QuantitativeValue
33 +* QuantitativeValueRange
34 +* Dataset
35 +* DatasetVersion
36 +* MetaDataModel
37 +* MetaDataModelVersion
38 +* Model
39 +* ModelVersion
40 +* Project
41 +* Software
42 +* SoftwareVersion
43 +* ParameterSetting
44 +* Protocol
45 +* ProtocolExecution
46 +* Subject
47 +* SubjectGroup
48 +* SubjectGroupState
49 +* SubjectState
50 +* TissueSample
51 +* TissueSampleCollection
52 +* TissueSampleCollectionState
53 +* TissueSampleState
73 73  
74 -(% class="wikigeneratedid" style="text-align: justify;" %)
75 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
76 -
77 -(% class="wikigeneratedid" %)
78 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core]]
79 -
80 80  === openMINDS SANDS ===
81 81  
82 -(% style="text-align: justify;" %)
83 -The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
57 +xxx
84 84  
85 -{{container layoutStyle="columns"}}
86 -(((
87 -(% class="small" %)
88 -AnatomicalEntity
89 -AnatomicalEntityRelation
90 -Annotation
91 -AtlasTerminology
92 -)))
93 -(((
94 -(% class="small" %)
95 -BrainAtlas
96 -BrainAtlasVersion
97 -CoordinatePoint
98 -CoordinateSpace
99 -)))
100 -(((
101 -(% class="small" %)
102 -Electrode
103 -ElectrodeArray
104 -ElectrodeContact
105 -Image
106 -)))
107 -{{/container}}
59 +=== openMINDS controlledTerms ===
108 108  
109 -(% class="wikigeneratedid" style="text-align: justify;" %)
110 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
61 +xxx
111 111  
112 -(% class="wikigeneratedid" %)
113 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
114 -
115 -=== openMINDS controlledTerms - schemas ===
116 -
117 -(% style="text-align: justify;" %)
118 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
119 -
120 -{{container layoutStyle="columns"}}
121 -(((
122 -(% class="small" %)
123 -AgeCategory
124 -AnatomicalAxesOrientation
125 -BehavioralTask
126 -BiologicalSex
127 -CellType
128 -ContributionType
129 -CriteriaQualityType
130 -DatasetType
131 -Disease
132 -DiseaseModel
133 -EthicsAssessment
134 -FileBundleGrouping
135 -FileUsageRole
136 -)))
137 -(((
138 -(% class="small" %)
139 -Genotype
140 -Language
141 -Laterality
142 -MetaDataModelType
143 -Modality
144 -ModelAbstractionLevel
145 -ModelScope
146 -OperatingDevice
147 -OperatingSystem
148 -Organ
149 -Phenotype
150 -PreparationType
151 -ProductAccessibility
152 -)))
153 -(((
154 -(% class="small" %)
155 -ProgrammingLanguage
156 -QualitativeOverlap
157 -SoftwareApplicationCategory
158 -SoftwareFeature
159 -Species
160 -Strain
161 -Technique
162 -TermSuggestion
163 -Terminology
164 -TissueSampleType
165 -TypeOfUncertainty
166 -UnitOfMeasurement
167 -)))
168 -{{/container}}
169 -
170 -(% style="text-align: justify;" %)
171 -Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
172 -
173 -(% class="wikigeneratedid" style="text-align: justify;" %)
174 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
175 -
176 -(% class="wikigeneratedid" %)
177 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
178 -
179 179  === openMINDS instances ===
180 180  
181 181  xxx
Public

openMINDS