Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -12,7 +12,6 @@ 12 12 13 13 === openMINDS core === 14 14 15 -(% style="text-align: justify;" %) 16 16 The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 17 17 18 18 {{container layoutStyle="columns"}} ... ... @@ -26,19 +26,19 @@ 26 26 Person 27 27 (% class="small" %) 28 28 **DATA** 29 -ContentType *28 +ContentType 30 30 Copyright 31 31 FileBundle 32 32 FileInstance 33 33 FileRepository 34 34 Hash 35 -License *34 +License 36 36 ))) 37 37 ((( 38 38 (% class="small" %) 39 39 **MISCELLANEOUS** 40 40 DigitalIdentifier 41 -DigitalIdentifierSchema *40 +DigitalIdentifierSchema 42 42 Funding 43 43 QuantitativeValue 44 44 QuantitativeValueRange ... ... @@ -71,138 +71,14 @@ 71 71 ))) 72 72 {{/container}} 73 73 74 -(% class="wikigeneratedid" style="text-align: justify;" %) 75 -In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances). 76 - 77 -(% class="wikigeneratedid" style="text-align: justify;" %) 78 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 79 - 80 -(% class="wikigeneratedid" %) 81 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]] 82 - 83 83 === openMINDS SANDS === 84 84 85 -(% style="text-align: justify;" %) 86 -The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 75 +The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 87 87 88 -{{container layoutStyle="columns"}} 89 -((( 90 -(% class="small" %) 91 -AnatomicalEntity 92 -AnatomicalEntityRelation 93 -Annotation 94 -AtlasTerminology 95 -))) 96 -((( 97 -(% class="small" %) 98 -BrainAtlas 99 -BrainAtlasVersion 100 -CoordinatePoint 101 -CoordinateSpace 102 -))) 103 -((( 104 -(% class="small" %) 105 -Electrode 106 -ElectrodeArray 107 -ElectrodeContact 108 -Image 109 -))) 110 -{{/container}} 77 +=== openMINDS controlledTerms === 111 111 112 -(% class="wikigeneratedid" style="text-align: justify;" %) 113 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 79 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. 114 114 115 -(% class="wikigeneratedid" %) 116 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]] 117 - 118 -=== openMINDS controlledTerms - schemas === 119 - 120 -(% style="text-align: justify;" %) 121 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 122 - 123 -{{container layoutStyle="columns"}} 124 -((( 125 -(% class="small" %) 126 -AgeCategory 127 -AnatomicalAxesOrientation 128 -BehavioralTask 129 -BiologicalSex 130 -CellType 131 -ContributionType 132 -CriteriaQualityType 133 -DatasetType 134 -Disease 135 -DiseaseModel 136 -EthicsAssessment 137 -FileBundleGrouping 138 -FileUsageRole 139 -))) 140 -((( 141 -(% class="small" %) 142 -Genotype 143 -Language 144 -Laterality 145 -MetaDataModelType 146 -Modality 147 -ModelAbstractionLevel 148 -ModelScope 149 -OperatingDevice 150 -OperatingSystem 151 -Organ 152 -Phenotype 153 -PreparationType 154 -ProductAccessibility 155 -))) 156 -((( 157 -(% class="small" %) 158 -ProgrammingLanguage 159 -QualitativeOverlap 160 -SoftwareApplicationCategory 161 -SoftwareFeature 162 -Species 163 -Strain 164 -Technique 165 -TermSuggestion* 166 -Terminology 167 -TissueSampleType 168 -TypeOfUncertainty 169 -UnitOfMeasurement 170 -))) 171 -{{/container}} 172 - 173 -(% style="text-align: justify;" %) 174 -Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). 175 - 176 -(% style="text-align: justify;" %) 177 -Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable). 178 - 179 -(% class="wikigeneratedid" style="text-align: justify;" %) 180 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 181 - 182 -(% class="wikigeneratedid" %) 183 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]] 184 - 185 185 === openMINDS instances === 186 186 187 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas: 188 - 189 -{{container layoutStyle="columns"}} 190 -((( 191 -(% class="small" %) 192 -contentType 193 -))) 194 -((( 195 -(% class="small" %) 196 -License 197 -))) 198 -((( 199 -(% class="small" %) 200 -DigitalIdentifierSchema 201 -))) 202 -{{/container}} 203 - 204 -(% class="wikigeneratedid" style="text-align: justify;" %) 205 -For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository: 206 - 207 -(% class="wikigeneratedid" %) 208 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]] 83 +xxx