Last modified by lzehl on 2021/07/02 17:06

From version 18.1
edited by lzehl
on 2021/02/22 16:50
Change comment: There is no comment for this version
To version 11.1
edited by lzehl
on 2021/02/22 15:22
Change comment: There is no comment for this version

Summary

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12 12  
13 13  === openMINDS core ===
14 14  
15 -(% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 18  {{container layoutStyle="columns"}}
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26 26  Person
27 27  (% class="small" %)
28 28  **DATA**
29 -ContentType*
28 +ContentType
30 30  Copyright
31 31  FileBundle
32 32  FileInstance
33 33  FileRepository
34 34  Hash
35 -License*
34 +License
36 36  )))
37 37  (((
38 38  (% class="small" %)
39 39  **MISCELLANEOUS**
40 40  DigitalIdentifier
41 -DigitalIdentifierSchema*
40 +DigitalIdentifierSchema
42 42  Funding
43 43  QuantitativeValue
44 44  QuantitativeValueRange
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71 71  )))
72 72  {{/container}}
73 73  
74 -(% class="wikigeneratedid" style="text-align: justify;" %)
75 -In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
76 -
77 -(% class="wikigeneratedid" style="text-align: justify;" %)
78 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
79 -
80 -(% class="wikigeneratedid" %)
81 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
82 -
83 83  === openMINDS SANDS ===
84 84  
85 -(% style="text-align: justify;" %)
86 -The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
75 +The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
87 87  
88 88  {{container layoutStyle="columns"}}
89 89  (((
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109 109  )))
110 110  {{/container}}
111 111  
112 -(% class="wikigeneratedid" style="text-align: justify;" %)
113 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
101 +=== openMINDS controlledTerms ===
114 114  
115 -(% class="wikigeneratedid" %)
116 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
103 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable.
117 117  
118 -=== openMINDS controlledTerms - schemas ===
119 -
120 -(% style="text-align: justify;" %)
121 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
122 -
123 -{{container layoutStyle="columns"}}
124 -(((
125 -(% class="small" %)
126 -AgeCategory
127 -AnatomicalAxesOrientation
128 -BehavioralTask
129 -BiologicalSex
130 -CellType
131 -ContributionType
132 -CriteriaQualityType
133 -DatasetType
134 -Disease
135 -DiseaseModel
136 -EthicsAssessment
137 -FileBundleGrouping
138 -FileUsageRole
139 -)))
140 -(((
141 -(% class="small" %)
142 -Genotype
143 -Language
144 -Laterality
145 -MetaDataModelType
146 -Modality
147 -ModelAbstractionLevel
148 -ModelScope
149 -OperatingDevice
150 -OperatingSystem
151 -Organ
152 -Phenotype
153 -PreparationType
154 -ProductAccessibility
155 -)))
156 -(((
157 -(% class="small" %)
158 -ProgrammingLanguage
159 -QualitativeOverlap
160 -SoftwareApplicationCategory
161 -SoftwareFeature
162 -Species
163 -Strain
164 -Technique
165 -TermSuggestion*
166 -Terminology
167 -TissueSampleType
168 -TypeOfUncertainty
169 -UnitOfMeasurement
170 -)))
171 -{{/container}}
172 -
173 -(% style="text-align: justify;" %)
174 -Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
175 -
176 -(% style="text-align: justify;" %)
177 -Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
178 -
179 -(% class="wikigeneratedid" style="text-align: justify;" %)
180 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
181 -
182 -(% class="wikigeneratedid" %)
183 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
184 -
185 185  === openMINDS instances ===
186 186  
187 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
188 -
189 -{{container layoutStyle="columns"}}
190 -(((
191 -(% class="small" %)
192 -contentType
193 -)))
194 -(((
195 -(% class="small" %)
196 -License
197 -)))
198 -(((
199 -(% class="small" %)
200 -DigitalIdentifierSchema
201 -)))
202 -{{/container}}
203 -
204 -(% class="wikigeneratedid" style="text-align: justify;" %)
205 -For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository:
206 -
207 -(% class="wikigeneratedid" %)
208 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]]
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openMINDS