Last modified by lzehl on 2021/07/02 17:06
From version 18.1
edited by lzehl
on 2021/02/22 16:50
Change comment: There is no comment for this version
To version 30.1
edited by oschmid
on 2021/02/23 22:04
Change comment: There is no comment for this version

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1 -XWiki.lzehl
1 +XWiki.oschmid
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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
7 +A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 +(% style="text-align: right;" %)
19 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 +
21 +{{html}}
22 +<iframe src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>
23 +{{/html}}
24 +
18 18  {{container layoutStyle="columns"}}
19 19  (((
20 20  (% class="small" %)
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85 85  (% style="text-align: justify;" %)
86 86  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
87 87  
95 +(% style="text-align: right;" %)
96 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
97 +
98 +(% style="text-align: right;" %)
99 +(% class="small" style="color:#7f8c8d" %){{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
100 +
88 88  {{container layoutStyle="columns"}}
89 89  (((
90 90  (% class="small" %)
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120 120  (% style="text-align: justify;" %)
121 121  The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
122 122  
136 +(% style="text-align: right;" %)
137 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
138 +
139 +(% style="text-align: right;" %)
140 +(% class="small" style="color:#7f8c8d" %){{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 25em"/>{{/html}}
141 +
123 123  {{container layoutStyle="columns"}}
124 124  (((
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182 182  (% class="wikigeneratedid" %)
183 183  [[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
184 184  
204 +=== openMINDS controlledTerms - terminologies ===
205 +
206 +The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
207 +
208 +(% style="text-align: right;" %)
209 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its available instances (including their Knowledge Graph ID).
210 +
211 +{{container layoutStyle="columns"}}
212 +(((
213 +(% class="small" %)
214 +AgeCategory
215 +AnatomicalAxesOrientation
216 +BehavioralTask
217 +BiologicalSex
218 +CellType
219 +ContributionType
220 +CriteriaQualityType
221 +DatasetType
222 +Disease
223 +DiseaseModel
224 +EthicsAssessment
225 +FileBundleGrouping
226 +FileUsageRole
227 +)))
228 +(((
229 +(% class="small" %)
230 +Genotype
231 +Language
232 +Laterality
233 +MetaDataModelType
234 +Modality
235 +ModelAbstractionLevel
236 +ModelScope
237 +OperatingDevice
238 +OperatingSystem
239 +Organ
240 +Phenotype
241 +PreparationType
242 +ProductAccessibility
243 +)))
244 +(((
245 +(% class="small" %)
246 +ProgrammingLanguage
247 +QualitativeOverlap
248 +SoftwareApplicationCategory
249 +SoftwareFeature
250 +Species
251 +Strain
252 +Technique
253 +Terminology
254 +TissueSampleType
255 +TypeOfUncertainty
256 +UnitOfMeasurement
257 +)))
258 +{{/container}}
259 +
185 185  === openMINDS instances ===
186 186  
187 187  The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
188 188  
264 +(% style="text-align: right;" %)
265 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its available instances (including their Knowledge Graph ID).
266 +
189 189  {{container layoutStyle="columns"}}
190 190  (((
191 191  (% class="small" %)
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openMINDS