Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -15,9 +15,6 @@ 15 15 (% style="text-align: justify;" %) 16 16 The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 17 17 18 -(% style="text-align: right;" %) 19 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema. 20 - 21 21 {{container layoutStyle="columns"}} 22 22 ((( 23 23 (% class="small" %) ... ... @@ -88,9 +88,6 @@ 88 88 (% style="text-align: justify;" %) 89 89 The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 90 90 91 -(% style="text-align: right;" %) 92 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema. 93 - 94 94 {{container layoutStyle="columns"}} 95 95 ((( 96 96 (% class="small" %) ... ... @@ -126,9 +126,6 @@ 126 126 (% style="text-align: justify;" %) 127 127 The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 128 128 129 -(% style="text-align: right;" %) 130 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema. 131 - 132 132 {{container layoutStyle="columns"}} 133 133 ((( 134 134 (% class="small" %) ... ... @@ -180,11 +180,8 @@ 180 180 {{/container}} 181 181 182 182 (% style="text-align: justify;" %) 183 -Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). 174 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. 184 184 185 -(% style="text-align: justify;" %) 186 -Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable). 187 - 188 188 (% class="wikigeneratedid" style="text-align: justify;" %) 189 189 For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 190 190 ... ... @@ -191,69 +191,10 @@ 191 191 (% class="wikigeneratedid" %) 192 192 [[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]] 193 193 194 -=== openMINDS controlledTerms - terminologies === 195 - 196 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas: 197 - 198 -(% style="text-align: right;" %) 199 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID). 200 - 201 -{{container layoutStyle="columns"}} 202 -((( 203 -(% class="small" %) 204 -AgeCategory 205 -AnatomicalAxesOrientation 206 -BehavioralTask 207 -BiologicalSex 208 -CellType 209 -ContributionType 210 -CriteriaQualityType 211 -DatasetType 212 -Disease 213 -DiseaseModel 214 -EthicsAssessment 215 -FileBundleGrouping 216 -FileUsageRole 217 -))) 218 -((( 219 -(% class="small" %) 220 -Genotype 221 -Language 222 -Laterality 223 -MetaDataModelType 224 -Modality 225 -ModelAbstractionLevel 226 -ModelScope 227 -OperatingDevice 228 -OperatingSystem 229 -Organ 230 -Phenotype 231 -PreparationType 232 -ProductAccessibility 233 -))) 234 -((( 235 -(% class="small" %) 236 -ProgrammingLanguage 237 -QualitativeOverlap 238 -SoftwareApplicationCategory 239 -SoftwareFeature 240 -Species 241 -Strain 242 -Technique 243 -Terminology 244 -TissueSampleType 245 -TypeOfUncertainty 246 -UnitOfMeasurement 247 -))) 248 -{{/container}} 249 - 250 250 === openMINDS instances === 251 251 252 252 The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas: 253 253 254 -(% style="text-align: right;" %) 255 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID). 256 - 257 257 {{container layoutStyle="columns"}} 258 258 ((( 259 259 (% class="small" %)