Last modified by lzehl on 2021/07/02 17:06
From version 21.1
edited by lzehl
on 2021/02/22 18:44
Change comment: There is no comment for this version
To version 12.1
edited by lzehl
on 2021/02/22 15:51
Change comment: There is no comment for this version

Summary

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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
7 +Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
... ... @@ -15,9 +15,6 @@
15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 -(% style="text-align: right;" %)
19 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
20 -
21 21  {{container layoutStyle="columns"}}
22 22  (((
23 23  (% class="small" %)
... ... @@ -29,19 +29,19 @@
29 29  Person
30 30  (% class="small" %)
31 31  **DATA**
32 -ContentType*
29 +ContentType
33 33  Copyright
34 34  FileBundle
35 35  FileInstance
36 36  FileRepository
37 37  Hash
38 -License*
35 +License
39 39  )))
40 40  (((
41 41  (% class="small" %)
42 42  **MISCELLANEOUS**
43 43  DigitalIdentifier
44 -DigitalIdentifierSchema*
41 +DigitalIdentifierSchema
45 45  Funding
46 46  QuantitativeValue
47 47  QuantitativeValueRange
... ... @@ -74,23 +74,11 @@
74 74  )))
75 75  {{/container}}
76 76  
77 -(% class="wikigeneratedid" style="text-align: justify;" %)
78 -In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
79 -
80 -(% class="wikigeneratedid" style="text-align: justify;" %)
81 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
82 -
83 -(% class="wikigeneratedid" %)
84 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
85 -
86 86  === openMINDS SANDS ===
87 87  
88 88  (% style="text-align: justify;" %)
89 89  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
90 90  
91 -(% style="text-align: right;" %)
92 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
93 -
94 94  {{container layoutStyle="columns"}}
95 95  (((
96 96  (% class="small" %)
... ... @@ -115,20 +115,11 @@
115 115  )))
116 116  {{/container}}
117 117  
118 -(% class="wikigeneratedid" style="text-align: justify;" %)
119 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
120 -
121 -(% class="wikigeneratedid" %)
122 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
123 -
124 124  === openMINDS controlledTerms - schemas ===
125 125  
126 126  (% style="text-align: justify;" %)
127 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
106 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 schemas:
128 128  
129 -(% style="text-align: right;" %)
130 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
131 -
132 132  {{container layoutStyle="columns"}}
133 133  (((
134 134  (% class="small" %)
... ... @@ -144,10 +144,10 @@
144 144  DiseaseModel
145 145  EthicsAssessment
146 146  FileBundleGrouping
147 -FileUsageRole
148 148  )))
149 149  (((
150 150  (% class="small" %)
126 +FileUsageRole
151 151  Genotype
152 152  Language
153 153  Laterality
... ... @@ -159,80 +159,11 @@
159 159  OperatingSystem
160 160  Organ
161 161  Phenotype
162 -PreparationType
163 -ProductAccessibility
164 164  )))
165 165  (((
166 166  (% class="small" %)
167 -ProgrammingLanguage
168 -QualitativeOverlap
169 -SoftwareApplicationCategory
170 -SoftwareFeature
171 -Species
172 -Strain
173 -Technique
174 -TermSuggestion*
175 -Terminology
176 -TissueSampleType
177 -TypeOfUncertainty
178 -UnitOfMeasurement
179 -)))
180 -{{/container}}
181 -
182 -(% style="text-align: justify;" %)
183 -Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
184 -
185 -(% style="text-align: justify;" %)
186 -Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
187 -
188 -(% class="wikigeneratedid" style="text-align: justify;" %)
189 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
190 -
191 -(% class="wikigeneratedid" %)
192 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
193 -
194 -=== openMINDS controlledTerms - terminologies ===
195 -
196 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
197 -
198 -(% style="text-align: right;" %)
199 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
200 -
201 -{{container layoutStyle="columns"}}
202 -(((
203 -(% class="small" %)
204 -AgeCategory
205 -AnatomicalAxesOrientation
206 -BehavioralTask
207 -BiologicalSex
208 -CellType
209 -ContributionType
210 -CriteriaQualityType
211 -DatasetType
212 -Disease
213 -DiseaseModel
214 -EthicsAssessment
215 -FileBundleGrouping
216 -FileUsageRole
217 -)))
218 -(((
219 -(% class="small" %)
220 -Genotype
221 -Language
222 -Laterality
223 -MetaDataModelType
224 -Modality
225 -ModelAbstractionLevel
226 -ModelScope
227 -OperatingDevice
228 -OperatingSystem
229 -Organ
230 -Phenotype
231 231  PreparationType
232 232  ProductAccessibility
233 -)))
234 -(((
235 -(% class="small" %)
236 236  ProgrammingLanguage
237 237  QualitativeOverlap
238 238  SoftwareApplicationCategory
... ... @@ -240,6 +240,7 @@
240 240  Species
241 241  Strain
242 242  Technique
150 +TermSuggestion\*
243 243  Terminology
244 244  TissueSampleType
245 245  TypeOfUncertainty
... ... @@ -249,28 +249,4 @@
249 249  
250 250  === openMINDS instances ===
251 251  
252 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
253 -
254 -(% style="text-align: right;" %)
255 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
256 -
257 -{{container layoutStyle="columns"}}
258 -(((
259 -(% class="small" %)
260 -contentType
261 -)))
262 -(((
263 -(% class="small" %)
264 -License
265 -)))
266 -(((
267 -(% class="small" %)
268 -DigitalIdentifierSchema
269 -)))
270 -{{/container}}
271 -
272 -(% class="wikigeneratedid" style="text-align: justify;" %)
273 -For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository:
274 -
275 -(% class="wikigeneratedid" %)
276 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]]
160 +xxx
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openMINDS