Last modified by lzehl on 2021/07/02 17:06
From version 21.1
edited by lzehl
on 2021/02/22 18:44
Change comment: There is no comment for this version
To version 18.1
edited by lzehl
on 2021/02/22 16:50
Change comment: There is no comment for this version

Summary

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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
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7 -A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
7 +Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
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9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
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18 -(% style="text-align: right;" %)
19 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
20 -
21 21  {{container layoutStyle="columns"}}
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88 88  (% style="text-align: justify;" %)
89 89  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
90 90  
91 -(% style="text-align: right;" %)
92 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
93 -
94 94  {{container layoutStyle="columns"}}
95 95  (((
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126 126  (% style="text-align: justify;" %)
127 127  The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
128 128  
129 -(% style="text-align: right;" %)
130 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
131 -
132 132  {{container layoutStyle="columns"}}
133 133  (((
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191 191  (% class="wikigeneratedid" %)
192 192  [[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
193 193  
194 -=== openMINDS controlledTerms - terminologies ===
195 -
196 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
197 -
198 -(% style="text-align: right;" %)
199 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
200 -
201 -{{container layoutStyle="columns"}}
202 -(((
203 -(% class="small" %)
204 -AgeCategory
205 -AnatomicalAxesOrientation
206 -BehavioralTask
207 -BiologicalSex
208 -CellType
209 -ContributionType
210 -CriteriaQualityType
211 -DatasetType
212 -Disease
213 -DiseaseModel
214 -EthicsAssessment
215 -FileBundleGrouping
216 -FileUsageRole
217 -)))
218 -(((
219 -(% class="small" %)
220 -Genotype
221 -Language
222 -Laterality
223 -MetaDataModelType
224 -Modality
225 -ModelAbstractionLevel
226 -ModelScope
227 -OperatingDevice
228 -OperatingSystem
229 -Organ
230 -Phenotype
231 -PreparationType
232 -ProductAccessibility
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234 -(((
235 -(% class="small" %)
236 -ProgrammingLanguage
237 -QualitativeOverlap
238 -SoftwareApplicationCategory
239 -SoftwareFeature
240 -Species
241 -Strain
242 -Technique
243 -Terminology
244 -TissueSampleType
245 -TypeOfUncertainty
246 -UnitOfMeasurement
247 -)))
248 -{{/container}}
249 -
250 250  === openMINDS instances ===
251 251  
252 252  The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
253 253  
254 -(% style="text-align: right;" %)
255 -(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
256 -
257 257  {{container layoutStyle="columns"}}
258 258  (((
259 259  (% class="small" %)
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openMINDS