Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -1,26 +1,163 @@ 1 1 (% class="box infomessage" %) 2 2 ((( 3 3 (% style="text-align: justify;" %) 4 -The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata. Please find a description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below. 5 -))) 4 +The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata. 6 6 7 -(% class="box infomessage" %) 8 -((( 6 +(% style="text-align: justify;" %) 7 +Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below. 8 + 9 +(% style="text-align: justify;" %) 9 9 Note that all metadata models are licensed under the MIT license. 10 10 ))) 11 11 12 12 === openMINDS core === 13 13 14 -xxx 15 +(% style="text-align: justify;" %) 16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 15 15 18 +{{container layoutStyle="columns"}} 19 +((( 20 +(% class="small" %) 21 +**ACTORS** 22 +Affiliation 23 +ContactInformation 24 +Contribution 25 +Organization 26 +Person 27 +(% class="small" %) 28 +**DATA** 29 +ContentType 30 +Copyright 31 +FileBundle 32 +FileInstance 33 +FileRepository 34 +Hash 35 +License 36 +))) 37 +((( 38 +(% class="small" %) 39 +**MISCELLANEOUS** 40 +DigitalIdentifier 41 +DigitalIdentifierSchema 42 +Funding 43 +QuantitativeValue 44 +QuantitativeValueRange 45 +(% class="small" %) 46 +**PRODUCTS** 47 +Dataset 48 +DatasetVersion 49 +MetaDataModel 50 +MetaDataModelVersion 51 +Model 52 +ModelVersion 53 +Project 54 +Software 55 +SoftwareVersion 56 +))) 57 +((( 58 +(% class="small" %) 59 +**RESEARCH** 60 +ParameterSetting 61 +Protocol 62 +ProtocolExecution 63 +Subject 64 +SubjectGroup 65 +SubjectGroupState 66 +SubjectState 67 +TissueSample 68 +TissueSampleCollection 69 +TissueSampleCollectionState 70 +TissueSampleState 71 +))) 72 +{{/container}} 73 + 16 16 === openMINDS SANDS === 17 17 18 -xxx 76 +(% style="text-align: justify;" %) 77 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 19 19 20 -=== openMINDS controlledTerms === 79 +{{container layoutStyle="columns"}} 80 +((( 81 +(% class="small" %) 82 +AnatomicalEntity 83 +AnatomicalEntityRelation 84 +Annotation 85 +AtlasTerminology 86 +))) 87 +((( 88 +(% class="small" %) 89 +BrainAtlas 90 +BrainAtlasVersion 91 +CoordinatePoint 92 +CoordinateSpace 93 +))) 94 +((( 95 +(% class="small" %) 96 +Electrode 97 +ElectrodeArray 98 +ElectrodeContact 99 +Image 100 +))) 101 +{{/container}} 21 21 22 - xxx103 +=== openMINDS controlledTerms - schemas === 23 23 105 +(% style="text-align: justify;" %) 106 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 107 + 108 +{{container layoutStyle="columns"}} 109 +((( 110 +(% class="small" %) 111 +AgeCategory 112 +AnatomicalAxesOrientation 113 +BehavioralTask 114 +BiologicalSex 115 +CellType 116 +ContributionType 117 +CriteriaQualityType 118 +DatasetType 119 +Disease 120 +DiseaseModel 121 +EthicsAssessment 122 +FileBundleGrouping 123 +FileUsageRole 124 +))) 125 +((( 126 +(% class="small" %) 127 +Genotype 128 +Language 129 +Laterality 130 +MetaDataModelType 131 +Modality 132 +ModelAbstractionLevel 133 +ModelScope 134 +OperatingDevice 135 +OperatingSystem 136 +Organ 137 +Phenotype 138 +PreparationType 139 +ProductAccessibility 140 +))) 141 +((( 142 +(% class="small" %) 143 +ProgrammingLanguage 144 +QualitativeOverlap 145 +SoftwareApplicationCategory 146 +SoftwareFeature 147 +Species 148 +Strain 149 +Technique 150 +TermSuggestion 151 +Terminology 152 +TissueSampleType 153 +TypeOfUncertainty 154 +UnitOfMeasurement 155 +))) 156 +{{/container}} 157 + 158 +(% style="text-align: justify;" %) 159 +Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. 160 + 24 24 === openMINDS instances === 25 25 26 26 xxx