Last modified by lzehl on 2021/07/02 17:06
From version 30.1
edited by oschmid
on 2021/02/23 22:04
Change comment: There is no comment for this version
To version 18.1
edited by lzehl
on 2021/02/22 16:50
Change comment: There is no comment for this version

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1 -XWiki.oschmid
1 +XWiki.lzehl
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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
7 +Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 -(% style="text-align: right;" %)
19 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 -
21 -{{html}}
22 -<iframe src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>
23 -{{/html}}
24 -
25 25  {{container layoutStyle="columns"}}
26 26  (((
27 27  (% class="small" %)
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92 92  (% style="text-align: justify;" %)
93 93  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
94 94  
95 -(% style="text-align: right;" %)
96 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
97 -
98 -(% style="text-align: right;" %)
99 -(% class="small" style="color:#7f8c8d" %){{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
100 -
101 101  {{container layoutStyle="columns"}}
102 102  (((
103 103  (% class="small" %)
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133 133  (% style="text-align: justify;" %)
134 134  The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
135 135  
136 -(% style="text-align: right;" %)
137 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
138 -
139 -(% style="text-align: right;" %)
140 -(% class="small" style="color:#7f8c8d" %){{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 25em"/>{{/html}}
141 -
142 142  {{container layoutStyle="columns"}}
143 143  (((
144 144  (% class="small" %)
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201 201  (% class="wikigeneratedid" %)
202 202  [[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
203 203  
204 -=== openMINDS controlledTerms - terminologies ===
205 -
206 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
207 -
208 -(% style="text-align: right;" %)
209 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its available instances (including their Knowledge Graph ID).
210 -
211 -{{container layoutStyle="columns"}}
212 -(((
213 -(% class="small" %)
214 -AgeCategory
215 -AnatomicalAxesOrientation
216 -BehavioralTask
217 -BiologicalSex
218 -CellType
219 -ContributionType
220 -CriteriaQualityType
221 -DatasetType
222 -Disease
223 -DiseaseModel
224 -EthicsAssessment
225 -FileBundleGrouping
226 -FileUsageRole
227 -)))
228 -(((
229 -(% class="small" %)
230 -Genotype
231 -Language
232 -Laterality
233 -MetaDataModelType
234 -Modality
235 -ModelAbstractionLevel
236 -ModelScope
237 -OperatingDevice
238 -OperatingSystem
239 -Organ
240 -Phenotype
241 -PreparationType
242 -ProductAccessibility
243 -)))
244 -(((
245 -(% class="small" %)
246 -ProgrammingLanguage
247 -QualitativeOverlap
248 -SoftwareApplicationCategory
249 -SoftwareFeature
250 -Species
251 -Strain
252 -Technique
253 -Terminology
254 -TissueSampleType
255 -TypeOfUncertainty
256 -UnitOfMeasurement
257 -)))
258 -{{/container}}
259 -
260 260  === openMINDS instances ===
261 261  
262 262  The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
263 263  
264 -(% style="text-align: right;" %)
265 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its available instances (including their Knowledge Graph ID).
266 -
267 267  {{container layoutStyle="columns"}}
268 268  (((
269 269  (% class="small" %)
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openMINDS