Last modified by lzehl on 2021/07/02 17:06
From version 32.1
edited by lzehl
on 2021/02/24 11:31
Change comment: There is no comment for this version
To version 18.1
edited by lzehl
on 2021/02/22 16:50
Change comment: There is no comment for this version

Summary

Details

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Content
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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and links to available metadata instances for selected schemas.
7 +Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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15 15  (% style="text-align: justify;" %)
16 16  The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
17 17  
18 -(% style="text-align: right;" %)
19 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 -{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>{{/html}}
18 +{{container layoutStyle="columns"}}
19 +(((
20 +(% class="small" %)
21 +**ACTORS**
22 +Affiliation
23 +ContactInformation
24 +Contribution
25 +Organization
26 +Person
27 +(% class="small" %)
28 +**DATA**
29 +ContentType*
30 +Copyright
31 +FileBundle
32 +FileInstance
33 +FileRepository
34 +Hash
35 +License*
36 +)))
37 +(((
38 +(% class="small" %)
39 +**MISCELLANEOUS**
40 +DigitalIdentifier
41 +DigitalIdentifierSchema*
42 +Funding
43 +QuantitativeValue
44 +QuantitativeValueRange
45 +(% class="small" %)
46 +**PRODUCTS**
47 +Dataset
48 +DatasetVersion
49 +MetaDataModel
50 +MetaDataModelVersion
51 +Model
52 +ModelVersion
53 +Project
54 +Software
55 +SoftwareVersion
56 +)))
57 +(((
58 +(% class="small" %)
59 +**RESEARCH**
60 +ParameterSetting
61 +Protocol
62 +ProtocolExecution
63 +Subject
64 +SubjectGroup
65 +SubjectGroupState
66 +SubjectState
67 +TissueSample
68 +TissueSampleCollection
69 +TissueSampleCollectionState
70 +TissueSampleState
71 +)))
72 +{{/container}}
21 21  
22 22  (% class="wikigeneratedid" style="text-align: justify;" %)
23 23  In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
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33 33  (% style="text-align: justify;" %)
34 34  The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
35 35  
36 -(% style="text-align: right;" %)
37 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
38 -{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
88 +{{container layoutStyle="columns"}}
89 +(((
90 +(% class="small" %)
91 +AnatomicalEntity
92 +AnatomicalEntityRelation
93 +Annotation
94 +AtlasTerminology
95 +)))
96 +(((
97 +(% class="small" %)
98 +BrainAtlas
99 +BrainAtlasVersion
100 +CoordinatePoint
101 +CoordinateSpace
102 +)))
103 +(((
104 +(% class="small" %)
105 +Electrode
106 +ElectrodeArray
107 +ElectrodeContact
108 +Image
109 +)))
110 +{{/container}}
39 39  
40 40  (% class="wikigeneratedid" style="text-align: justify;" %)
41 41  For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
... ... @@ -48,29 +48,6 @@
48 48  (% style="text-align: justify;" %)
49 49  The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
50 50  
51 -(% style="text-align: right;" %)
52 -(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
53 -{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/controlledTerms.html" width="100%" style="border:0; height: 25em"/>{{/html}}
54 -
55 -(% style="text-align: justify;" %)
56 -Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
57 -
58 -(% style="text-align: justify;" %)
59 -Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
60 -
61 -(% class="wikigeneratedid" style="text-align: justify;" %)
62 -For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
63 -
64 -(% class="wikigeneratedid" %)
65 -[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
66 -
67 -=== openMINDS controlledTerms - terminologies ===
68 -
69 -The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
70 -
71 -(% style="text-align: right;" %)
72 -(% class="small" style="color:#7f8c8d" %)//**Coming soon:** //Click on a schema to discover its available instances.
73 -
74 74  {{container layoutStyle="columns"}}
75 75  (((
76 76  (% class="small" %)
... ... @@ -113,6 +113,7 @@
113 113  Species
114 114  Strain
115 115  Technique
165 +TermSuggestion*
116 116  Terminology
117 117  TissueSampleType
118 118  TypeOfUncertainty
... ... @@ -120,13 +120,22 @@
120 120  )))
121 121  {{/container}}
122 122  
173 +(% style="text-align: justify;" %)
174 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
175 +
176 +(% style="text-align: justify;" %)
177 +Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
178 +
179 +(% class="wikigeneratedid" style="text-align: justify;" %)
180 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
181 +
182 +(% class="wikigeneratedid" %)
183 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
184 +
123 123  === openMINDS instances ===
124 124  
125 125  The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
126 126  
127 -(% style="text-align: right;" %)
128 -(% class="small" style="color:#7f8c8d" %)//**Coming soon:**// Click on a schema to discover its available instances.
129 -
130 130  {{container layoutStyle="columns"}}
131 131  (((
132 132  (% class="small" %)
Public

openMINDS