Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -12,16 +12,194 @@ 12 12 13 13 === openMINDS core === 14 14 15 -xxx 15 +(% style="text-align: justify;" %) 16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 16 16 18 +{{container layoutStyle="columns"}} 19 +((( 20 +(% class="small" %) 21 +**ACTORS** 22 +Affiliation 23 +ContactInformation 24 +Contribution 25 +Organization 26 +Person 27 +(% class="small" %) 28 +**DATA** 29 +ContentType* 30 +Copyright 31 +FileBundle 32 +FileInstance 33 +FileRepository 34 +Hash 35 +License* 36 +))) 37 +((( 38 +(% class="small" %) 39 +**MISCELLANEOUS** 40 +DigitalIdentifier 41 +DigitalIdentifierSchema* 42 +Funding 43 +QuantitativeValue 44 +QuantitativeValueRange 45 +(% class="small" %) 46 +**PRODUCTS** 47 +Dataset 48 +DatasetVersion 49 +MetaDataModel 50 +MetaDataModelVersion 51 +Model 52 +ModelVersion 53 +Project 54 +Software 55 +SoftwareVersion 56 +))) 57 +((( 58 +(% class="small" %) 59 +**RESEARCH** 60 +ParameterSetting 61 +Protocol 62 +ProtocolExecution 63 +Subject 64 +SubjectGroup 65 +SubjectGroupState 66 +SubjectState 67 +TissueSample 68 +TissueSampleCollection 69 +TissueSampleCollectionState 70 +TissueSampleState 71 +))) 72 +{{/container}} 73 + 74 +(% class="wikigeneratedid" style="text-align: justify;" %) 75 +In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances). 76 + 77 +(% class="wikigeneratedid" style="text-align: justify;" %) 78 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 79 + 80 +(% class="wikigeneratedid" %) 81 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]] 82 + 17 17 === openMINDS SANDS === 18 18 19 -xxx 85 +(% style="text-align: justify;" %) 86 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 20 20 21 -=== openMINDS controlledTerms === 88 +{{container layoutStyle="columns"}} 89 +((( 90 +(% class="small" %) 91 +AnatomicalEntity 92 +AnatomicalEntityRelation 93 +Annotation 94 +AtlasTerminology 95 +))) 96 +((( 97 +(% class="small" %) 98 +BrainAtlas 99 +BrainAtlasVersion 100 +CoordinatePoint 101 +CoordinateSpace 102 +))) 103 +((( 104 +(% class="small" %) 105 +Electrode 106 +ElectrodeArray 107 +ElectrodeContact 108 +Image 109 +))) 110 +{{/container}} 22 22 23 -xxx 112 +(% class="wikigeneratedid" style="text-align: justify;" %) 113 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 24 24 115 +(% class="wikigeneratedid" %) 116 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]] 117 + 118 +=== openMINDS controlledTerms - schemas === 119 + 120 +(% style="text-align: justify;" %) 121 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 122 + 123 +{{container layoutStyle="columns"}} 124 +((( 125 +(% class="small" %) 126 +AgeCategory 127 +AnatomicalAxesOrientation 128 +BehavioralTask 129 +BiologicalSex 130 +CellType 131 +ContributionType 132 +CriteriaQualityType 133 +DatasetType 134 +Disease 135 +DiseaseModel 136 +EthicsAssessment 137 +FileBundleGrouping 138 +FileUsageRole 139 +))) 140 +((( 141 +(% class="small" %) 142 +Genotype 143 +Language 144 +Laterality 145 +MetaDataModelType 146 +Modality 147 +ModelAbstractionLevel 148 +ModelScope 149 +OperatingDevice 150 +OperatingSystem 151 +Organ 152 +Phenotype 153 +PreparationType 154 +ProductAccessibility 155 +))) 156 +((( 157 +(% class="small" %) 158 +ProgrammingLanguage 159 +QualitativeOverlap 160 +SoftwareApplicationCategory 161 +SoftwareFeature 162 +Species 163 +Strain 164 +Technique 165 +TermSuggestion* 166 +Terminology 167 +TissueSampleType 168 +TypeOfUncertainty 169 +UnitOfMeasurement 170 +))) 171 +{{/container}} 172 + 173 +(% style="text-align: justify;" %) 174 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. 175 + 176 +(% class="wikigeneratedid" style="text-align: justify;" %) 177 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 178 + 179 +(% class="wikigeneratedid" %) 180 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]] 181 + 25 25 === openMINDS instances === 26 26 27 -xxx 184 +The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas: 185 + 186 +{{container layoutStyle="columns"}} 187 +((( 188 +(% class="small" %) 189 +contentType 190 +))) 191 +((( 192 +(% class="small" %) 193 +License 194 +))) 195 +((( 196 +(% class="small" %) 197 +DigitalIdentifierSchema 198 +))) 199 +{{/container}} 200 + 201 +(% class="wikigeneratedid" style="text-align: justify;" %) 202 +For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository: 203 + 204 +(% class="wikigeneratedid" %) 205 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]]