Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -12,54 +12,149 @@ 12 12 13 13 === openMINDS core === 14 14 15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas: 15 +(% style="text-align: justify;" %) 16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 16 16 17 -* Affiliation 18 -* ContactInformation 19 -* Contribution 20 -* Organization 21 -* Person 22 -* ContentType 23 -* Copyright 24 -* FileBundle 25 -* FileInstance 26 -* FileRepository 27 -* Hash 28 -* License 29 -* DigitalIdentifier 30 -* DigitalIdentifierSchema 31 -* Funding 32 -* QuantitativeValue 33 -* QuantitativeValueRange 34 -* Dataset 35 -* DatasetVersion 36 -* MetaDataModel 37 -* MetaDataModelVersion 38 -* Model 39 -* ModelVersion 40 -* Project 41 -* Software 42 -* SoftwareVersion 43 -* ParameterSetting 44 -* Protocol 45 -* ProtocolExecution 46 -* Subject 47 -* SubjectGroup 48 -* SubjectGroupState 49 -* SubjectState 50 -* TissueSample 51 -* TissueSampleCollection 52 -* TissueSampleCollectionState 53 -* TissueSampleState 18 +{{container layoutStyle="columns"}} 19 +((( 20 +(% class="small" %) 21 +**ACTORS** 22 +Affiliation 23 +ContactInformation 24 +Contribution 25 +Organization 26 +Person 27 +(% class="small" %) 28 +**DATA** 29 +ContentType 30 +Copyright 31 +FileBundle 32 +FileInstance 33 +FileRepository 34 +Hash 35 +License 36 +))) 37 +((( 38 +(% class="small" %) 39 +**MISCELLANEOUS** 40 +DigitalIdentifier 41 +DigitalIdentifierSchema 42 +Funding 43 +QuantitativeValue 44 +QuantitativeValueRange 45 +(% class="small" %) 46 +**PRODUCTS** 47 +Dataset 48 +DatasetVersion 49 +MetaDataModel 50 +MetaDataModelVersion 51 +Model 52 +ModelVersion 53 +Project 54 +Software 55 +SoftwareVersion 56 +))) 57 +((( 58 +(% class="small" %) 59 +**RESEARCH** 60 +ParameterSetting 61 +Protocol 62 +ProtocolExecution 63 +Subject 64 +SubjectGroup 65 +SubjectGroupState 66 +SubjectState 67 +TissueSample 68 +TissueSampleCollection 69 +TissueSampleCollectionState 70 +TissueSampleState 71 +))) 72 +{{/container}} 54 54 55 55 === openMINDS SANDS === 56 56 57 -xxx 76 +(% style="text-align: justify;" %) 77 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 58 58 59 -=== openMINDS controlledTerms === 79 +{{container layoutStyle="columns"}} 80 +((( 81 +(% class="small" %) 82 +AnatomicalEntity 83 +AnatomicalEntityRelation 84 +Annotation 85 +AtlasTerminology 86 +))) 87 +((( 88 +(% class="small" %) 89 +BrainAtlas 90 +BrainAtlasVersion 91 +CoordinatePoint 92 +CoordinateSpace 93 +))) 94 +((( 95 +(% class="small" %) 96 +Electrode 97 +ElectrodeArray 98 +ElectrodeContact 99 +Image 100 +))) 101 +{{/container}} 60 60 61 - xxx103 +=== openMINDS controlledTerms - schemas === 62 62 105 +(% style="text-align: justify;" %) 106 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 schemas: 107 + 108 +{{container layoutStyle="columns"}} 109 +((( 110 +(% class="small" %) 111 +AgeCategory 112 +AnatomicalAxesOrientation 113 +BehavioralTask 114 +BiologicalSex 115 +CellType 116 +ContributionType 117 +CriteriaQualityType 118 +DatasetType 119 +Disease 120 +DiseaseModel 121 +EthicsAssessment 122 +FileBundleGrouping 123 +))) 124 +((( 125 +(% class="small" %) 126 +FileUsageRole 127 +Genotype 128 +Language 129 +Laterality 130 +MetaDataModelType 131 +Modality 132 +ModelAbstractionLevel 133 +ModelScope 134 +OperatingDevice 135 +OperatingSystem 136 +Organ 137 +Phenotype 138 +))) 139 +((( 140 +(% class="small" %) 141 +PreparationType 142 +ProductAccessibility 143 +ProgrammingLanguage 144 +QualitativeOverlap 145 +SoftwareApplicationCategory 146 +SoftwareFeature 147 +Species 148 +Strain 149 +Technique 150 +TermSuggestion\* 151 +Terminology 152 +TissueSampleType 153 +TypeOfUncertainty 154 +UnitOfMeasurement 155 +))) 156 +{{/container}} 157 + 63 63 === openMINDS instances === 64 64 65 65 xxx