Last modified by lzehl on 2021/07/02 17:06
From version 6.1
edited by lzehl
on 2021/02/18 17:38
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To version 16.1
edited by lzehl
on 2021/02/22 16:27
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Summary

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12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 -* Affiliation
18 -* ContactInformation
19 -* Contribution
20 -* Organization
21 -* Person
22 -* ContentType
23 -* Copyright
24 -* FileBundle
25 -* FileInstance
26 -* FileRepository
27 -* Hash
28 -* License
29 -* DigitalIdentifier
30 -* DigitalIdentifierSchema
31 -* Funding
32 -* QuantitativeValue
33 -* QuantitativeValueRange
34 -* Dataset
35 -* DatasetVersion
36 -* MetaDataModel
37 -* MetaDataModelVersion
38 -* Model
39 -* ModelVersion
40 -* Project
41 -* Software
42 -* SoftwareVersion
43 -* ParameterSetting
44 -* Protocol
45 -* ProtocolExecution
46 -* Subject
47 -* SubjectGroup
48 -* SubjectGroupState
49 -* SubjectState
50 -* TissueSample
51 -* TissueSampleCollection
52 -* TissueSampleCollectionState
53 -* TissueSampleState
18 +{{container layoutStyle="columns"}}
19 +(((
20 +(% class="small" %)
21 +**ACTORS**
22 +Affiliation
23 +ContactInformation
24 +Contribution
25 +Organization
26 +Person
27 +(% class="small" %)
28 +**DATA**
29 +ContentType*
30 +Copyright
31 +FileBundle
32 +FileInstance
33 +FileRepository
34 +Hash
35 +License*
36 +)))
37 +(((
38 +(% class="small" %)
39 +**MISCELLANEOUS**
40 +DigitalIdentifier
41 +DigitalIdentifierSchema*
42 +Funding
43 +QuantitativeValue
44 +QuantitativeValueRange
45 +(% class="small" %)
46 +**PRODUCTS**
47 +Dataset
48 +DatasetVersion
49 +MetaDataModel
50 +MetaDataModelVersion
51 +Model
52 +ModelVersion
53 +Project
54 +Software
55 +SoftwareVersion
56 +)))
57 +(((
58 +(% class="small" %)
59 +**RESEARCH**
60 +ParameterSetting
61 +Protocol
62 +ProtocolExecution
63 +Subject
64 +SubjectGroup
65 +SubjectGroupState
66 +SubjectState
67 +TissueSample
68 +TissueSampleCollection
69 +TissueSampleCollectionState
70 +TissueSampleState
71 +)))
72 +{{/container}}
54 54  
74 +(% class="wikigeneratedid" style="text-align: justify;" %)
75 +In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
76 +
77 +(% class="wikigeneratedid" style="text-align: justify;" %)
78 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
79 +
80 +(% class="wikigeneratedid" %)
81 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
82 +
55 55  === openMINDS SANDS ===
56 56  
57 -xxx
85 +(% style="text-align: justify;" %)
86 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
58 58  
59 -=== openMINDS controlledTerms ===
88 +{{container layoutStyle="columns"}}
89 +(((
90 +(% class="small" %)
91 +AnatomicalEntity
92 +AnatomicalEntityRelation
93 +Annotation
94 +AtlasTerminology
95 +)))
96 +(((
97 +(% class="small" %)
98 +BrainAtlas
99 +BrainAtlasVersion
100 +CoordinatePoint
101 +CoordinateSpace
102 +)))
103 +(((
104 +(% class="small" %)
105 +Electrode
106 +ElectrodeArray
107 +ElectrodeContact
108 +Image
109 +)))
110 +{{/container}}
60 60  
61 -xxx
112 +(% class="wikigeneratedid" style="text-align: justify;" %)
113 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
62 62  
115 +(% class="wikigeneratedid" %)
116 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
117 +
118 +=== openMINDS controlledTerms - schemas ===
119 +
120 +(% style="text-align: justify;" %)
121 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
122 +
123 +{{container layoutStyle="columns"}}
124 +(((
125 +(% class="small" %)
126 +AgeCategory
127 +AnatomicalAxesOrientation
128 +BehavioralTask
129 +BiologicalSex
130 +CellType
131 +ContributionType
132 +CriteriaQualityType
133 +DatasetType
134 +Disease
135 +DiseaseModel
136 +EthicsAssessment
137 +FileBundleGrouping
138 +FileUsageRole
139 +)))
140 +(((
141 +(% class="small" %)
142 +Genotype
143 +Language
144 +Laterality
145 +MetaDataModelType
146 +Modality
147 +ModelAbstractionLevel
148 +ModelScope
149 +OperatingDevice
150 +OperatingSystem
151 +Organ
152 +Phenotype
153 +PreparationType
154 +ProductAccessibility
155 +)))
156 +(((
157 +(% class="small" %)
158 +ProgrammingLanguage
159 +QualitativeOverlap
160 +SoftwareApplicationCategory
161 +SoftwareFeature
162 +Species
163 +Strain
164 +Technique
165 +TermSuggestion*
166 +Terminology
167 +TissueSampleType
168 +TypeOfUncertainty
169 +UnitOfMeasurement
170 +)))
171 +{{/container}}
172 +
173 +(% style="text-align: justify;" %)
174 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
175 +
176 +(% class="wikigeneratedid" style="text-align: justify;" %)
177 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
178 +
179 +(% class="wikigeneratedid" %)
180 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
181 +
63 63  === openMINDS instances ===
64 64  
65 65  xxx
Public

openMINDS