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12	12
13	13	=== openMINDS core ===
14	14
15		-The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas:
	15	+(% style="text-align: justify;" %)
	16	+The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16	16
17		-* Affiliation
18		-* ContactInformation
19		-* Contribution
20		-* Organization
21		-* Person
22		-* ContentType
23		-* Copyright
24		-* FileBundle
25		-* FileInstance
26		-* FileRepository
27		-* Hash
28		-* License
29		-* DigitalIdentifier
30		-* DigitalIdentifierSchema
31		-* Funding
32		-* QuantitativeValue
33		-* QuantitativeValueRange
34		-* Dataset
35		-* DatasetVersion
36		-* MetaDataModel
37		-* MetaDataModelVersion
38		-* Model
39		-* ModelVersion
40		-* Project
41		-* Software
42		-* SoftwareVersion
43		-* ParameterSetting
44		-* Protocol
45		-* ProtocolExecution
46		-* Subject
47		-* SubjectGroup
48		-* SubjectGroupState
49		-* SubjectState
50		-* TissueSample
51		-* TissueSampleCollection
52		-* TissueSampleCollectionState
53		-* TissueSampleState
	18	+(% style="text-align: right;" %)
	19	+(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
54	54
	21	+{{container layoutStyle="columns"}}
	22	+(((
	23	+(% class="small" %)
	24	+**ACTORS**
	25	+Affiliation
	26	+ContactInformation
	27	+Contribution
	28	+Organization
	29	+Person
	30	+(% class="small" %)
	31	+**DATA**
	32	+ContentType*
	33	+Copyright
	34	+FileBundle
	35	+FileInstance
	36	+FileRepository
	37	+Hash
	38	+License*
	39	+)))
	40	+(((
	41	+(% class="small" %)
	42	+**MISCELLANEOUS**
	43	+DigitalIdentifier
	44	+DigitalIdentifierSchema*
	45	+Funding
	46	+QuantitativeValue
	47	+QuantitativeValueRange
	48	+(% class="small" %)
	49	+**PRODUCTS**
	50	+Dataset
	51	+DatasetVersion
	52	+MetaDataModel
	53	+MetaDataModelVersion
	54	+Model
	55	+ModelVersion
	56	+Project
	57	+Software
	58	+SoftwareVersion
	59	+)))
	60	+(((
	61	+(% class="small" %)
	62	+**RESEARCH**
	63	+ParameterSetting
	64	+Protocol
	65	+ProtocolExecution
	66	+Subject
	67	+SubjectGroup
	68	+SubjectGroupState
	69	+SubjectState
	70	+TissueSample
	71	+TissueSampleCollection
	72	+TissueSampleCollectionState
	73	+TissueSampleState
	74	+)))
	75	+{{/container}}
	76	+
	77	+(% class="wikigeneratedid" style="text-align: justify;" %)
	78	+In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
	79	+
	80	+(% class="wikigeneratedid" style="text-align: justify;" %)
	81	+For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	82	+
	83	+(% class="wikigeneratedid" %)
	84	+[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
	85	+
55	55	=== openMINDS SANDS ===
56	56
57		-xxx
	88	+(% style="text-align: justify;" %)
	89	+The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
58	58
59		-=== openMINDS controlledTerms ===
	91	+(% style="text-align: right;" %)
	92	+(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
60	60
61		-xxx
	94	+{{container layoutStyle="columns"}}
	95	+(((
	96	+(% class="small" %)
	97	+AnatomicalEntity
	98	+AnatomicalEntityRelation
	99	+Annotation
	100	+AtlasTerminology
	101	+)))
	102	+(((
	103	+(% class="small" %)
	104	+BrainAtlas
	105	+BrainAtlasVersion
	106	+CoordinatePoint
	107	+CoordinateSpace
	108	+)))
	109	+(((
	110	+(% class="small" %)
	111	+Electrode
	112	+ElectrodeArray
	113	+ElectrodeContact
	114	+Image
	115	+)))
	116	+{{/container}}
62	62
	118	+(% class="wikigeneratedid" style="text-align: justify;" %)
	119	+For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	120	+
	121	+(% class="wikigeneratedid" %)
	122	+[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
	123	+
	124	+=== openMINDS controlledTerms - schemas ===
	125	+
	126	+(% style="text-align: justify;" %)
	127	+The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
	128	+
	129	+(% style="text-align: right;" %)
	130	+(% class="small" style="color:#7f8c8d" %)Click on schema to discover the full HTML view of this schema.
	131	+
	132	+{{container layoutStyle="columns"}}
	133	+(((
	134	+(% class="small" %)
	135	+AgeCategory
	136	+AnatomicalAxesOrientation
	137	+BehavioralTask
	138	+BiologicalSex
	139	+CellType
	140	+ContributionType
	141	+CriteriaQualityType
	142	+DatasetType
	143	+Disease
	144	+DiseaseModel
	145	+EthicsAssessment
	146	+FileBundleGrouping
	147	+FileUsageRole
	148	+)))
	149	+(((
	150	+(% class="small" %)
	151	+Genotype
	152	+Language
	153	+Laterality
	154	+MetaDataModelType
	155	+Modality
	156	+ModelAbstractionLevel
	157	+ModelScope
	158	+OperatingDevice
	159	+OperatingSystem
	160	+Organ
	161	+Phenotype
	162	+PreparationType
	163	+ProductAccessibility
	164	+)))
	165	+(((
	166	+(% class="small" %)
	167	+ProgrammingLanguage
	168	+QualitativeOverlap
	169	+SoftwareApplicationCategory
	170	+SoftwareFeature
	171	+Species
	172	+Strain
	173	+Technique
	174	+TermSuggestion*
	175	+Terminology
	176	+TissueSampleType
	177	+TypeOfUncertainty
	178	+UnitOfMeasurement
	179	+)))
	180	+{{/container}}
	181	+
	182	+(% style="text-align: justify;" %)
	183	+Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies).
	184	+
	185	+(% style="text-align: justify;" %)
	186	+Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. Within the EBRAINS Knowledge Graph, the metadata representations for TermSuggestion will be regularly reviewed by the openMINDS development team in order to integrate these community driven suggestions into the controlledTerms terminologies and corresponding ontology (where applicable).
	187	+
	188	+(% class="wikigeneratedid" style="text-align: justify;" %)
	189	+For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	190	+
	191	+(% class="wikigeneratedid" %)
	192	+[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
	193	+
	194	+=== openMINDS controlledTerms - terminologies ===
	195	+
	196	+The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
	197	+
	198	+(% style="text-align: right;" %)
	199	+(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
	200	+
	201	+{{container layoutStyle="columns"}}
	202	+(((
	203	+(% class="small" %)
	204	+AgeCategory
	205	+AnatomicalAxesOrientation
	206	+BehavioralTask
	207	+BiologicalSex
	208	+CellType
	209	+ContributionType
	210	+CriteriaQualityType
	211	+DatasetType
	212	+Disease
	213	+DiseaseModel
	214	+EthicsAssessment
	215	+FileBundleGrouping
	216	+FileUsageRole
	217	+)))
	218	+(((
	219	+(% class="small" %)
	220	+Genotype
	221	+Language
	222	+Laterality
	223	+MetaDataModelType
	224	+Modality
	225	+ModelAbstractionLevel
	226	+ModelScope
	227	+OperatingDevice
	228	+OperatingSystem
	229	+Organ
	230	+Phenotype
	231	+PreparationType
	232	+ProductAccessibility
	233	+)))
	234	+(((
	235	+(% class="small" %)
	236	+ProgrammingLanguage
	237	+QualitativeOverlap
	238	+SoftwareApplicationCategory
	239	+SoftwareFeature
	240	+Species
	241	+Strain
	242	+Technique
	243	+TermSuggestion*
	244	+Terminology
	245	+TissueSampleType
	246	+TypeOfUncertainty
	247	+UnitOfMeasurement
	248	+)))
	249	+{{/container}}
	250	+
63	63	=== openMINDS instances ===
64	64
65		-xxx
	253	+The openMINDS instances repository holds a collection of metadata representations (instances) of selected schemas which content should be more controlled to ensure their consistent definition and usage for the entire EBRAINS Knowledge Graph. Currently the repository holds collections for the following schemas:
	254	+
	255	+(% style="text-align: right;" %)
	256	+(% class="small" style="color:#7f8c8d" %)Click on schema to discover the correspondingly, available instances (including their Knowledge Graph ID).
	257	+
	258	+{{container layoutStyle="columns"}}
	259	+(((
	260	+(% class="small" %)
	261	+contentType
	262	+)))
	263	+(((
	264	+(% class="small" %)
	265	+License
	266	+)))
	267	+(((
	268	+(% class="small" %)
	269	+DigitalIdentifierSchema
	270	+)))
	271	+{{/container}}
	272	+
	273	+(% class="wikigeneratedid" style="text-align: justify;" %)
	274	+For details, contributing or reviewing the openMINDS instances please checkout as well the corresponding GitHub repository:
	275	+
	276	+(% class="wikigeneratedid" %)
	277	+[[https:~~/~~/github.com/HumanBrainProject/openMINDS_instances>>https://github.com/HumanBrainProject/openMINDS_instances]]